Protein

View in Explore
Genbank accession
AIK67601.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,74
Protein sequence
MSYKQSAYPNLLMGVSQQVPFERLPGQLSEQINMVSDPVSGLRRRSGIELMAHLLHTDQPWPRPFLYHTNLGGRSIAMLVAQHRGELYLFDERDGRLLMGQPLVHDYLKADDYRQLRAATVADDLFIANLSVKPEADRTDIRGVDPNKAGWLYIKAGQYSKAFSMTIKVKDNATGTTYSHTATYVTPDNASTNPNLAEAPFQTSVGYIAWQLYGKFFGAPEYTLPNSTKKYPKVDPDANAATIAGYLNQRGVQDGYIAFRGDADIHVEVSTDMGNNYGIASGGMSLNATADLPALLPGAGTPGVGVQFMDGAVMATGSTKAPVYFEWDSANRRWAERAAYGTDWVLKKMPLALRWDEATDTYSLNELDYDRRGSGDEDTNPTFNFVTRGITGMTTFQGRLVLLSQEYVCMSASNNPHRWFKKSAAALNDDDPIEIAAQGSLTEPYEHAVTFNKDLIVFAKKYQAVVPGGGIVTPRTAVISITTQYDLDTRAAPAVTGRSVYFAAERALGFMGLHEMAPSPSTDSHYVAEDVTSHIPSYMPGPAEYIQAAASSGYLVFGTSTADEMICHQYLWQGNEKVQNAFHRWTLRHQIIGAYFTGDNLMVLIQKGQEIALGRMHLNSLPAREGLQYPKYDYWRRIEATVDGELELTKQHWDLIKDASAVYQLQPVAGAYMERTHLGVKRETSTKVFLDVPEAVVGSVYVVGCEFWSKVEFTPPVLRDHNGLPMTATRAVLHRYNVNFGWTGEFLWRISDTARPNQPWYDTTPLRLFSRQLNAGEPLVDSAVVPLPARVDMATSKFELSCHSPYDMNVRAVEYNFKSNQIYRRV
Physico‐chemical
properties
protein length:826 AA
molecular weight: 92048,75890 Da
isoelectric point:5,98545
aromaticity:0,10775
hydropathy:-0,33015

Domains

Domains [InterPro]
IPR058003
TTP
1–816
IPR058003
DC_0058
STR
1–826
DC_0058
AIK67601.1
1 826
Architecture
STR
STR 1-826
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AIK67601.1
1 826
Domain Start End Length (AA) Confidence
N-terminal 1 141 141 0,9890
Central domain 142 340 200 0,2439
C-terminal 341 826 485 0,3207
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-141
Central
142-340
C-terminal
341-826

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeP_PPA-ABTNL
[NCBI] 		1527525 Uroviricota > Caudoviricetes > Autographivirales > Krylovirinae > Phikmvvirus
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AIK67601.1 [NCBI]
Genbank nucleotide accession
KM067278 [NCBI]
CDS location
range 26502 -> 28982
strand +
CDS
ATGAGCTACAAGCAATCCGCGTATCCCAATCTGCTGATGGGTGTGAGCCAGCAGGTGCCCTTCGAGCGCCTGCCGGGCCAGCTCAGCGAGCAGATCAACATGGTATCCGATCCCGTGTCAGGACTTCGGCGGCGCAGCGGTATCGAGCTGATGGCCCACCTGCTGCATACCGACCAGCCCTGGCCGAGGCCGTTCCTCTACCACACGAACCTAGGTGGCCGTAGCATCGCGATGCTGGTAGCTCAGCACCGTGGCGAGCTGTACCTGTTCGACGAGCGGGATGGCCGCCTGCTGATGGGCCAGCCCCTGGTGCATGACTACCTCAAGGCCGACGATTACAGGCAGCTACGGGCCGCCACGGTGGCCGATGACCTGTTCATCGCCAACCTGAGTGTGAAGCCCGAGGCCGACCGCACCGACATCAGGGGCGTAGACCCCAACAAGGCCGGCTGGCTGTACATCAAGGCAGGCCAGTATTCGAAGGCATTCTCCATGACCATCAAGGTCAAGGACAACGCCACCGGCACCACCTACAGCCACACGGCCACCTACGTGACGCCGGACAACGCCAGCACGAACCCCAACCTCGCTGAGGCGCCATTCCAAACGAGCGTAGGCTACATCGCGTGGCAGCTCTACGGCAAGTTCTTCGGTGCGCCGGAGTACACTCTGCCCAACTCGACGAAGAAGTACCCGAAGGTGGACCCGGACGCCAACGCGGCAACCATAGCCGGCTACCTCAACCAGCGTGGAGTGCAGGACGGGTACATCGCATTCCGGGGCGACGCCGACATCCACGTCGAAGTGTCCACGGACATGGGCAACAACTACGGCATCGCTTCGGGTGGTATGAGCCTCAACGCCACGGCAGACCTGCCGGCCCTACTACCCGGCGCCGGTACTCCTGGCGTCGGAGTGCAGTTCATGGACGGCGCGGTCATGGCCACCGGCTCCACCAAGGCGCCCGTGTACTTCGAGTGGGATTCCGCTAACCGCCGCTGGGCGGAGCGGGCCGCCTACGGCACCGATTGGGTCCTGAAGAAGATGCCCTTGGCCCTGCGCTGGGACGAAGCCACCGATACCTACAGCTTGAACGAGCTGGACTATGATCGGCGGGGCTCCGGCGACGAGGACACGAACCCCACGTTCAACTTCGTCACCCGAGGCATCACCGGCATGACGACCTTCCAGGGTCGCCTCGTCCTCCTGTCGCAGGAGTACGTCTGCATGTCGGCCAGCAACAATCCGCACCGCTGGTTCAAGAAGTCGGCAGCCGCGCTGAACGACGACGATCCTATCGAGATCGCAGCTCAGGGGAGCCTGACTGAGCCGTACGAGCACGCGGTCACCTTCAACAAGGACTTGATCGTCTTCGCCAAGAAGTATCAGGCCGTGGTCCCCGGTGGCGGCATTGTAACTCCCCGGACGGCGGTTATCAGCATCACCACGCAGTACGACCTCGATACCAGGGCGGCACCTGCCGTGACTGGCCGCAGTGTATACTTCGCTGCGGAGCGTGCCCTGGGTTTCATGGGCCTGCATGAGATGGCCCCGTCGCCGTCCACGGACAGCCACTACGTCGCCGAAGACGTTACCAGCCACATCCCGAGCTACATGCCGGGGCCTGCTGAGTACATCCAGGCGGCGGCCTCCAGCGGCTACCTGGTGTTCGGCACCAGCACGGCGGACGAGATGATCTGCCACCAGTACCTCTGGCAGGGCAACGAGAAAGTGCAGAACGCGTTTCATCGCTGGACGTTGCGACATCAGATCATCGGCGCCTACTTCACTGGCGACAACCTGATGGTCCTGATTCAGAAGGGCCAGGAGATCGCCCTGGGACGTATGCACCTGAACAGCCTGCCAGCCCGTGAGGGTCTGCAATACCCTAAATACGACTACTGGCGGCGTATCGAGGCGACCGTCGATGGTGAGCTGGAGCTGACCAAGCAGCATTGGGACCTGATCAAGGATGCCTCTGCCGTGTACCAGCTACAGCCTGTGGCCGGCGCCTACATGGAGCGTACCCATCTCGGCGTGAAACGCGAGACGAGTACGAAGGTGTTCCTCGACGTGCCCGAGGCCGTGGTCGGGTCGGTGTACGTGGTTGGTTGTGAGTTCTGGTCTAAGGTGGAGTTCACTCCGCCGGTTCTCCGGGACCACAACGGCCTACCCATGACCGCGACCCGTGCAGTGCTCCATCGGTACAACGTAAACTTCGGCTGGACCGGCGAGTTCCTGTGGCGCATCAGCGACACGGCCCGGCCCAATCAGCCGTGGTACGACACGACGCCCCTGCGGTTGTTCAGTCGGCAGCTCAACGCCGGGGAACCTCTGGTGGACAGCGCCGTAGTGCCACTGCCGGCCAGGGTCGATATGGCAACGTCCAAGTTCGAGCTGAGCTGTCATAGTCCGTACGACATGAACGTCCGAGCTGTCGAGTACAACTTCAAGTCCAACCAAATCTACAGGAGGGTGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
94d450703d767496b5b4b6a50abc84c5703b0c75ff78856303ea64715523f4a3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8466
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a 'phiKMV-like' bacteriophage and its therapeutic effect on mink hemorrhagic pneumonia Cao,Z., Zhang,J., Niu,Y.D., Cui,N., Ma,Y., Cao,F., Jin,L., Li,Z. and Xu,Y. 2015 25615639 GenBank