Protein

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Genbank accession
WDR21456.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MGYFQMTRNVEELFGGVITAPHQIPFTYKSNVGGETFLSLPFYPVTGVVTINGGMQVPLDNFEIDGNTLNLGRALSKGDVVYCLFDKILSPEDTAKGIRIYKFQAVGGETEFTPDFTSYGVQSLYIGGEYKTPDIEYSYNSTTGKVSLQTALTAGVWVVAEISVKQPNISPAFDRSIQEIARSANVKDSEVIVSTDTISLLDGKKVVYDIAAQTSYGLPTLPTNVYISSVGNGQLTYQPGNVTVTLTDIPHSADELRKELASSSGHLLVPSVQIQNWKDIGDIRGWGAVEGQDCTAALQAAINDRSALGWGSSSDVIINGNYKIEGQVILTTDVRLIGNWATITSTSNDFIFVSGWKDGTGNVVPNITGYTDDEVIFQTRLKGTVIKGITFVGVAKVFKLYGFTERCGMEDLVFENCGVCWDTRLSFYPYYSNILIRGVKVGYEDWFAYQLRHQCNQVTFTKVTVSGRKYGELIADDVEPTVMPPIGKNCQHINHIDCTYEGVTKAVVANIKTIGYTNKGIYAEVVADNMFEFTTVEHYDVEIQPRWFAGVEKMGHFNNLRGNSKIWQGMQYDYVPAKRSALQFGNSIVTVYPAQEMLSYEPVSTMDSGIAFDGTSKVRMPRMRLTSDDVPVWDDNVNFARCPVTISGFIPHIDGKAIGVTAASYDQATDVLTLNTDIYWSVSNLVLVALQVYQTSNTVNRFNSTGVVMNGFASQFAGQSITYDNVGGLTVVKIAQPGGPSGSSWMTSGDYTVEGCIRLL
Physico‐chemical
properties
protein length:760 AA
molecular weight: 83279,02940 Da
isoelectric point:4,94922
aromaticity:0,10658
hydropathy:-0,06868

Domains

Domains [InterPro]
DC_0116
ATT
1–98
DC_0116 G3DSA:3.30.2020.50 IPR011050 DC_2233
DC_0397
ATT
85–546
DC_0397
IPR012334
STR
287–589
IPR012334
WDR21456.1
1 760
Architecture
ATT
STR
RBD
ATT 1-546 | STR 547-589 | RBD 590-760
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WDR21456.1
1 760
Domain Start End Length (AA) Confidence
N-terminal 1 292 292 0,9929
Central domain 293 651 360 0,9621
C-terminal 652 760 108 0,9613
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-292
Central
293-651
C-terminal
652-760

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SenM_UTK0005
[NCBI] 		3028903 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WDR21456.1 [NCBI]
Genbank nucleotide accession
OQ359884.1 [NCBI]
CDS location
range 122179 -> 124461
strand -
CDS
ATGGGGTATTTTCAAATGACCAGAAATGTAGAAGAATTATTCGGCGGCGTAATCACAGCTCCCCACCAGATTCCTTTCACGTATAAATCAAATGTCGGTGGAGAAACTTTCCTTTCCTTGCCGTTCTATCCTGTCACTGGCGTAGTCACAATTAACGGCGGCATGCAAGTTCCGTTAGACAACTTCGAGATAGACGGGAATACGTTGAATCTCGGGCGCGCATTGTCCAAAGGCGATGTTGTGTATTGCTTATTCGATAAAATTCTTTCACCAGAAGACACTGCCAAAGGCATCCGCATATACAAATTTCAAGCCGTGGGTGGAGAAACTGAATTCACGCCTGACTTTACTTCTTATGGTGTACAGTCTCTTTATATCGGTGGCGAGTACAAAACTCCTGATATAGAATATTCGTACAACAGTACGACTGGGAAAGTGTCTTTGCAAACTGCATTGACTGCAGGCGTTTGGGTAGTCGCTGAAATCTCTGTTAAACAACCGAATATCAGTCCGGCGTTTGACCGCAGTATTCAAGAAATTGCCCGTTCTGCTAATGTGAAAGACTCTGAAGTCATCGTTAGTACGGACACCATATCTTTGTTGGATGGGAAGAAAGTTGTTTATGACATAGCGGCACAAACCAGTTATGGTTTACCTACATTACCTACGAATGTATATATCTCATCTGTTGGTAATGGACAGTTAACTTACCAGCCAGGTAACGTAACTGTAACTTTAACTGATATCCCCCATTCAGCAGATGAATTACGAAAAGAATTAGCATCGTCATCTGGACATTTACTAGTGCCTTCGGTTCAAATTCAGAATTGGAAAGACATTGGGGATATTCGAGGATGGGGTGCTGTAGAAGGTCAAGATTGTACTGCTGCATTACAAGCTGCAATTAATGACCGTTCTGCTTTAGGGTGGGGAAGCAGTTCAGATGTAATCATCAATGGTAATTACAAAATTGAAGGACAAGTCATACTAACTACGGATGTTCGATTGATCGGTAATTGGGCAACAATAACTTCAACGTCAAATGATTTTATTTTTGTTTCTGGATGGAAAGATGGAACAGGTAATGTTGTACCAAATATTACTGGATATACGGATGATGAAGTTATCTTTCAAACCAGATTAAAAGGTACAGTTATTAAAGGTATTACCTTTGTAGGTGTGGCTAAAGTATTCAAACTGTATGGTTTTACTGAACGTTGTGGTATGGAAGATTTAGTCTTTGAGAACTGCGGTGTATGTTGGGATACCCGTTTATCATTCTATCCTTATTACTCTAACATCCTCATCCGAGGTGTTAAGGTGGGTTATGAAGATTGGTTTGCTTATCAGTTACGCCACCAATGTAATCAAGTTACTTTTACCAAAGTAACCGTTTCTGGGCGTAAGTACGGCGAACTTATTGCTGATGATGTTGAACCTACTGTTATGCCCCCCATTGGAAAGAACTGTCAGCATATTAATCATATTGACTGTACTTATGAAGGTGTGACCAAAGCAGTAGTAGCTAATATTAAAACTATTGGTTACACAAACAAAGGCATCTATGCTGAAGTTGTAGCAGATAACATGTTCGAATTTACTACAGTAGAACATTATGATGTAGAAATTCAACCTCGCTGGTTTGCTGGCGTAGAGAAGATGGGTCATTTCAATAATCTCAGAGGTAACTCTAAGATTTGGCAAGGAATGCAATATGACTATGTTCCTGCTAAACGTTCTGCACTTCAATTTGGCAATAGCATCGTTACTGTATACCCTGCTCAAGAAATGTTGTCATATGAGCCAGTATCCACTATGGACAGTGGTATTGCCTTTGACGGTACTTCTAAAGTCAGAATGCCAAGAATGCGTTTAACTTCTGATGATGTACCAGTGTGGGATGACAATGTTAACTTTGCTCGTTGTCCTGTTACTATTTCTGGATTTATCCCCCACATTGATGGGAAGGCAATTGGTGTAACCGCAGCCAGTTATGACCAAGCCACAGATGTTCTGACATTAAACACAGACATTTACTGGTCTGTTTCTAACCTGGTTCTGGTTGCATTGCAGGTATACCAGACCAGCAATACTGTTAACAGATTCAACTCTACGGGCGTCGTCATGAACGGGTTTGCTTCTCAGTTCGCTGGACAAAGTATAACCTATGACAACGTTGGTGGACTTACTGTAGTCAAGATTGCCCAACCTGGTGGACCATCTGGTAGTTCTTGGATGACTTCAGGGGACTACACAGTAGAAGGGTGTATTCGTTTACTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8e706cfb62f30e0b94b45a58f38043ca78d5e78cfe4ce92e5c10717f7f8528b3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5784
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a Diverse Collection of Salmonella Phages Isolated from Tennessee Wastewater Bryan,D.W., Hudson,L.K., Wang,J. and Denes,T.G. — — GenBank