Protein

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Genbank accession
YP_010767345.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,86
Protein sequence
MDLIKYDMADIWASAGDVVAPDSAKIAQGWGVEVVPRQWWNWFENRQDNNLAYMLQKGFPEWDATTEYIINKSYVQRSGIVYKATATSTNSDPIALLSWVKAFPESSNSLEAIRTLTPAADRVPYYTGADTAALMTVTAFARTLLDDPNVTTMRSTLGAQATHPNLTTLSTVTAAANALPYFTGTNSAATTTLTSFGRSLIDDADAVAARTTLGLTSAAITQLQANATERDIAKIMRVGAFGLGSFLDLRTHIYATGVPSDCYSAGTVFGFVNGGVGGLAIPGLSGTQYGVLQVNGQYSDASGLTAMSRVFIGPSGRTFTQTASSASAWGTWVESWTTGNLTKTTSNRDTTAGSMLKVGDFGLGAGVGLTTDDLNTVIDSGFYRLSTATTNYPHANAGFGQMIVCRGQDTISQMVFSYTGPRIWTRSGNPTNVGGVGVWTPWVELYHTGNTSQIVSDVTAGIQPQLDAKVNKAGDVMTGQLRVPNIVYTPLSGQGGTAYFLANGSTAPGGTDANITVDTPTAGNNGGRMVVNAGRFYMNCPTTTIGVASFQSDINTSGNVSAVNLNASGTITGAYITSTGNVNAAGTFTGSQVSVSGGVTAANGSGAVTISAGVVSIKSTSAGANAHVWFYDNVGNTRGIIYAQQSNTITLQAGGAVCANFSPSGGASFNLTSTSGIENNGRVRSLKNGVPVNGSMYANCHYMAETADGTPPAYSWHRGGSYALAVWLTNGNELQMMGSDGVSREIVNNSNLPAWNNSLYANGNQNIGSYAFARNGGGTVGFGGAQSGSVLSPGSTGANSGALSGTWICLGYAGGGNHTLWIRTS
Physico‐chemical
properties
protein length:825 AA
molecular weight: 85564,84300 Da
isoelectric point:5,93089
aromaticity:0,08848
hydropathy:-0,06848

Domains

Domains [InterPro]
DC_2128
STR
1–243
DC_2128 DC_0678 DC_1924
cd19958
STR
365–446
cd19958
YP_010767345.1
1 825
Architecture
STR
STR
RBD
STR 1-243 | STR 335-578 | RBD 608-825
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010767345.1
1 825
Domain Start End Length (AA) Confidence
N-terminal 1 506 506 0,4086
Central domain 507 705 200 0,3255
C-terminal 706 825 119 0,9605
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-506
Central
507-705
C-terminal
706-825

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phiPsa381
[NCBI] 		1460366 Uroviricota > Caudoviricetes > Vandenendeviridae > Otagovirus > Otagovirus psa381
Host Pseudomonas syringae pv. actinidiae
[NCBI] 		103796 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010767345.1 [NCBI]
Genbank nucleotide accession
NC_073684.1 [NCBI]
CDS location
range 51589 -> 54066
strand +
CDS
ATGGATCTGATTAAATATGACATGGCGGATATCTGGGCCTCTGCGGGTGACGTAGTTGCACCAGACTCTGCTAAGATTGCACAAGGTTGGGGTGTCGAAGTTGTTCCACGTCAATGGTGGAACTGGTTTGAAAACCGTCAAGACAACAACCTTGCTTACATGCTTCAAAAGGGTTTCCCAGAATGGGACGCCACAACTGAATACATCATCAACAAGAGTTATGTTCAACGTAGTGGTATTGTCTACAAGGCAACTGCAACAAGCACAAACTCTGACCCAATTGCATTGCTCTCTTGGGTAAAGGCTTTCCCAGAATCGTCTAACAGCCTTGAAGCTATTCGTACACTGACTCCTGCCGCTGACCGTGTTCCATATTACACTGGTGCTGACACCGCTGCTCTGATGACTGTTACAGCCTTTGCTCGTACACTTCTGGACGACCCCAATGTAACAACAATGCGTTCCACTTTGGGCGCTCAAGCTACTCACCCTAACTTGACAACTCTGTCCACTGTGACGGCTGCTGCTAACGCCCTGCCATACTTCACAGGAACAAACTCTGCTGCTACGACAACACTTACATCGTTCGGTCGTTCTCTGATTGACGACGCTGACGCTGTTGCTGCACGTACAACACTTGGACTAACATCTGCTGCAATCACTCAGCTACAGGCTAACGCAACTGAGCGTGATATCGCCAAAATCATGCGTGTTGGTGCTTTCGGTCTGGGTAGTTTCCTTGACCTGCGTACACACATCTACGCAACTGGTGTTCCAAGTGATTGCTACTCTGCTGGTACAGTCTTCGGATTTGTAAACGGTGGTGTTGGTGGCTTGGCTATTCCGGGGCTATCTGGTACTCAATACGGTGTCCTGCAAGTTAACGGACAATACAGCGATGCTTCTGGCCTTACCGCTATGTCTCGCGTATTCATCGGGCCAAGTGGACGTACTTTCACTCAAACTGCTTCCTCTGCTTCGGCTTGGGGCACATGGGTTGAATCTTGGACTACAGGCAACCTAACAAAGACAACAAGCAACCGTGACACAACAGCAGGCTCTATGCTGAAAGTTGGTGACTTCGGTCTTGGTGCTGGTGTTGGTTTGACAACAGACGACCTTAACACTGTAATTGACTCCGGCTTCTATCGCCTCTCCACTGCCACTACTAACTACCCGCATGCAAACGCTGGCTTCGGTCAGATGATTGTGTGTCGCGGACAAGATACAATCTCTCAGATGGTATTCAGCTATACTGGCCCGCGTATTTGGACTCGCTCTGGCAACCCAACTAACGTTGGTGGTGTTGGTGTTTGGACTCCGTGGGTTGAACTGTACCACACTGGTAACACTTCTCAGATCGTTTCTGACGTAACTGCTGGTATCCAACCACAATTGGACGCCAAAGTTAACAAAGCTGGCGATGTAATGACTGGTCAGTTGAGAGTTCCAAACATTGTTTACACTCCATTGTCTGGACAAGGCGGTACTGCCTACTTCCTAGCGAACGGCTCTACTGCTCCGGGTGGTACTGACGCAAACATCACAGTGGACACACCTACTGCCGGTAACAACGGTGGACGTATGGTGGTCAACGCTGGCAGGTTCTATATGAACTGCCCTACCACTACAATTGGTGTCGCGTCCTTCCAGTCTGATATCAACACATCTGGTAACGTGTCGGCTGTTAACCTTAATGCCTCTGGCACAATTACTGGTGCGTATATTACCTCTACAGGTAACGTAAACGCAGCCGGCACTTTCACTGGTTCTCAAGTCAGCGTCTCTGGCGGTGTTACAGCAGCTAATGGATCTGGTGCTGTTACAATTAGTGCTGGTGTTGTCTCTATCAAGTCTACCTCTGCTGGTGCTAACGCCCACGTTTGGTTCTACGACAACGTAGGTAACACGCGTGGTATCATCTACGCTCAGCAGTCCAACACTATCACCCTTCAAGCTGGTGGTGCGGTTTGTGCGAACTTCAGTCCTAGTGGTGGTGCAAGTTTCAACCTGACAAGCACATCTGGTATTGAAAACAACGGACGTGTACGTTCTCTAAAGAACGGAGTCCCAGTTAACGGCAGCATGTACGCAAACTGCCACTACATGGCTGAAACCGCTGACGGTACACCACCTGCCTACTCTTGGCACCGTGGTGGTAGCTACGCCCTAGCGGTATGGCTGACTAACGGCAACGAATTGCAGATGATGGGTTCTGACGGTGTAAGTCGTGAGATTGTTAACAACTCCAACCTACCGGCTTGGAACAACTCTCTGTACGCCAACGGCAACCAAAACATTGGTAGCTACGCCTTCGCCCGTAACGGCGGCGGTACAGTTGGATTCGGTGGTGCTCAGTCTGGTAGCGTATTGTCTCCGGGTTCTACAGGTGCAAACTCTGGTGCTCTTTCTGGTACTTGGATTTGCCTTGGATACGCTGGTGGCGGCAACCACACACTGTGGATCAGAACTTCCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
e9d8aca36d5bbd4faf38ed480c6a51c4a54dc51041ec8391bf74e84c209933a9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6368
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of Pseudomonas phiPsa374-like phages Warring,S., Malone,L.M., Easingwood,R.A., Rigano,L., Frampton,R.A., Lopez Acedo,E., Templeton,M.D., Kleffmann,T., Bostina,M. and Fineran,P.C. 2024-10 — GenBank