Protein

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Genbank accession
YP_009966394.1 [GenBank]
Protein name
tail appendage
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MIDIQARKYPTCICSAFGRLFYGAEGRVYFSQVFIDDIGVLGKCYQNNDPTSSEISDVLDTDGGEILIQNTGAVYDIIPFNTGVLVLASRGIWFVGQQGISFSATDYAVQKISDEGVVGYNSSTESVGSVYYVADSGIHRIAVNENGQIKSDNLTEFSINSVIQDFLVQGTTLMYNRKDRTLHVFDAGTNTEFVFEERTQGWYKNQYSSGTHQSSVYDRDTGQVFLYYSTDNTEVTYGFSTKSSDVFEDYGVTYESFIQSQPETLGKFSHDKRVTSMKVMFQKTEEQITGYDDEAAEYTYDSPSSCLFTAKWDFDGTGTGLRWTAQRDIYKPLQRKLIPEYYPYPFDTGETIISTKLGIRGYGKAIQFRFDAEPNKDMQILGYTVEYRMRGKQ
Physico‐chemical
properties
protein length:393 AA
molecular weight: 44449,70940 Da
isoelectric point:4,71192
aromaticity:0,13995
hydropathy:-0,44097

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009966394.1
1 393
Domain Start End Length (AA) Confidence
N-terminal 1 242 242 0,7744
Central domain 243 382 141 0,4819
C-terminal 383 393 10 0,9836
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-242
Central
243-382
C-terminal
383-393

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudoalteromonas phage HP1
[NCBI] 		1357706 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudoalteromonas sp.
[NCBI] 		53249 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009966394.1 [NCBI]
Genbank nucleotide accession
NC_048630 [NCBI]
CDS location
range 14120 -> 15301
strand -
CDS
TTGATTGATATACAAGCGAGGAAGTATCCTACTTGTATCTGTTCAGCATTCGGTCGTCTGTTCTACGGAGCAGAGGGTCGGGTGTACTTCTCTCAGGTATTCATTGATGACATAGGGGTTCTTGGTAAGTGCTACCAGAACAACGACCCTACGTCTTCTGAGATATCTGATGTACTAGATACAGACGGCGGTGAGATACTTATACAGAACACAGGTGCGGTGTACGACATCATACCTTTTAATACAGGCGTACTTGTACTAGCCTCTAGGGGTATCTGGTTCGTAGGGCAGCAAGGTATATCCTTCTCTGCTACTGACTACGCAGTACAGAAGATATCAGATGAAGGTGTAGTAGGATATAACAGCAGTACTGAATCAGTAGGTTCAGTGTACTACGTAGCTGACTCAGGTATTCACCGTATAGCTGTTAATGAGAACGGGCAGATTAAATCCGATAACCTTACAGAGTTCAGCATTAACTCAGTGATACAGGACTTCTTAGTCCAAGGTACTACGCTGATGTATAACCGTAAGGACAGGACACTGCACGTATTCGATGCTGGTACTAATACAGAGTTCGTATTCGAAGAGCGTACACAAGGCTGGTATAAGAATCAGTACTCTTCTGGTACACACCAGAGTTCAGTATACGACAGGGATACAGGTCAAGTCTTCTTGTACTACAGTACAGATAATACAGAGGTAACGTACGGATTCAGTACTAAGTCTTCTGATGTATTCGAGGACTACGGTGTAACGTACGAATCCTTTATTCAGTCACAGCCTGAGACCCTTGGTAAGTTCAGTCACGATAAACGTGTTACCTCTATGAAGGTTATGTTCCAGAAGACTGAGGAACAGATAACAGGTTACGATGATGAAGCTGCTGAGTACACGTACGACTCCCCTAGCTCTTGCCTATTCACGGCTAAGTGGGACTTCGATGGTACAGGGACAGGTCTACGCTGGACAGCACAGCGTGATATCTATAAGCCTTTACAACGTAAGCTAATACCTGAGTACTACCCTTATCCGTTCGATACAGGTGAGACTATTATAAGTACTAAGTTAGGCATACGTGGATACGGTAAAGCTATACAGTTCCGGTTCGATGCTGAACCTAATAAAGATATGCAGATACTTGGTTATACAGTTGAGTACCGCATGAGAGGAAAACAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
f15a37460cfbbfebfdd19ea9d59c63dc2aed12c64f1a220857f7862af655eb2b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7862
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Pseudoalteromonas phage genomics Duhaime,M.B. and Sullivan,M.B. 2010-07-08 — GenBank