Protein

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Genbank accession
WKV23590.1 [GenBank]
Protein name
long-tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MEKMMASFGNGYTKTQVISENNSIKYKISFAAGSVFSTPSSAYFTFQDNPIGDQQDGAGINIRVFNPALNTVSAKKTFLLTPNDNDPGNRAFIEYLSTFTQDNTNLLIFTTSGDIKTSNLVENKFKSIYSTMWPNKWMTSRYSCTYCGLFSIKNNKIIAENVTYSDGVLRDEDIRPALEFVYDKADDIGATGFSYRAVEDFEEYTSSAATIKRYPVDSASGVEISSIGISPGDILFWSFEFLHGDNIPPEVPGTNNNKIRIEIRWLNSSGGWIKSVNVDSNHANAGKWIQHEQTVEVPADAARIVILASKTTPTDTVGTGGVRSMILTETSRATEALTSPSAISVNGIRLNTIVSGDNPTLLILPANEVDSTGKPLPGEDVSGIIYSSDWREFEKNI
Physico‐chemical
properties
protein length:397 AA
molecular weight: 43546,08050 Da
isoelectric point:4,87220
aromaticity:0,09824
hydropathy:-0,28212

Domains

Domains [InterPro]
DC_0912
STR
1–397
DC_0912
PS52031
LEC
22–197
PS52031
WKV23590.1
1 397
Architecture
STR
STR 1-397
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WKV23590.1
1 397
Domain Start End Length (AA) Confidence
N-terminal 1 141 141 0,3737
Central domain 142 386 246 0,5708
C-terminal 387 397 10 0,2249
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-141
Central
142-386
C-terminal
387-397

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SEA1
[NCBI] 		3061287 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WKV23590.1 [NCBI]
Genbank nucleotide accession
OQ927978.1 [NCBI]
CDS location
range 149368 -> 150561
strand +
CDS
ATGGAAAAAATGATGGCGAGTTTTGGTAACGGATATACCAAAACTCAAGTTATTTCTGAAAATAATTCCATCAAATACAAAATTTCATTTGCTGCGGGGTCGGTTTTTTCGACCCCTTCTTCTGCTTATTTTACCTTTCAGGATAATCCAATAGGTGACCAGCAAGATGGTGCTGGTATAAATATCAGAGTTTTTAATCCAGCATTGAATACTGTATCTGCTAAGAAAACATTTTTATTGACACCCAATGATAATGACCCAGGCAATAGAGCATTCATTGAATATTTGTCAACATTTACTCAAGATAATACTAACTTGTTAATATTCACCACATCAGGTGATATTAAAACGAGCAATTTAGTAGAGAATAAATTTAAGTCCATTTATTCAACTATGTGGCCAAATAAATGGATGACATCTCGGTATTCATGTACTTATTGCGGTTTATTTTCAATAAAAAATAATAAAATTATTGCCGAAAACGTAACATATTCTGATGGAGTTCTTCGGGACGAAGACATCAGACCTGCTTTAGAATTCGTTTATGATAAAGCTGATGATATTGGAGCTACCGGGTTTTCTTATAGAGCTGTTGAAGATTTTGAAGAATACACTAGTTCCGCGGCAACAATAAAAAGATATCCAGTTGATTCTGCTTCGGGCGTAGAAATTAGCTCAATTGGAATATCTCCTGGCGATATTCTGTTCTGGTCATTTGAATTTTTGCATGGAGATAATATTCCGCCGGAAGTTCCAGGGACAAATAATAATAAAATAAGAATAGAAATAAGATGGTTAAATTCATCTGGAGGGTGGATTAAATCAGTTAATGTTGACTCTAACCACGCAAATGCTGGAAAATGGATACAGCACGAACAAACTGTTGAAGTCCCTGCTGACGCTGCCCGGATAGTTATTCTTGCTTCTAAAACTACTCCAACTGATACGGTCGGTACTGGAGGTGTTCGTAGTATGATTTTAACTGAAACTTCGCGAGCTACTGAGGCATTAACTTCTCCATCTGCGATATCAGTTAATGGCATTCGTTTGAATACTATAGTTTCAGGAGATAATCCGACACTTCTTATTTTGCCTGCTAATGAAGTTGATTCAACTGGCAAACCATTACCAGGTGAAGATGTTTCAGGAATAATTTACAGTTCTGATTGGAGAGAGTTTGAGAAAAATATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f706201463cd6d9ab1affb0d46d29379ca574d7bf9d48fb38fe6653c65c253a2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6338
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, identification and characterization of lytic, wide host range bacteriophages from waste effluents against Salmonella enterica serovars Akhtar,M., Viazis,S. and Diez-Gonzalez,F. 2014 — GenBank
Accurate and sensitive detection of Salmonella in foods by engineered bacteriophages Nguyen,M.M., Gil,J., Brown,M., Cesar Tondo,E., Soraya Martins de Aquino,N., Eisenberg,M. and Erickson,S. 2020 — GenBank