Protein

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Genbank accession
YP_009599754.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,54
TF
Evidence RBPdetect2
Probability 0,89
TF
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MSIRFNHASNTVTGTDVIKLVVEGGTPTAPRPFRIDSSSVIMPNKQLPSGEAGALVFDIVSKTLKYHNGISWVELLSQDDILAPIQISLTDIYNQLANRVSTVTYSTSSVPSASVSGTNLNIIFPSSGGGGGTDIPGLFTSSPPGSIMQYSLSSGQSVASIREQMSGVSGGQNGRNGTASAPYVTKTGWCFADGSYWTWNGESGSVTKVVPNLNQNAYLKGITTTGLTKTDAVISGSGSIGNTSISFPQHYHGTGMMVGLSGDWGDDGYFISNKTWNDGIQYQGVQITGDLQRRTTGPVNGSDARTALSTSLAIFTGSDTTSHTHSLNSVDVAHFNVAVVYNIAEPSSALNQNAGDRRYVLKSGDTMTGSLTIANSAAIQANDTNLVLWFRNASGGERAAIYHASNTNTLRLRTAGGSEMSLNNVGLLNVSSITTGSITGSSLNISGTATTGPLNVNGQITATGDIWAFSDERLKENIKPIENAVDIIKSIRGVTGNFIGDERTRSMVIAQEVQKNFPCAVTEDVSGFLKVNYDALIPLLLNAVSTMSEEIASLRSIIK
Physico‐chemical
properties
protein length:559 AA
molecular weight: 58839,86870 Da
isoelectric point:5,78578
aromaticity:0,06619
hydropathy:-0,11431

Domains

Domains [InterPro]
DC_0139
STR
5–559
DC_0139
IPR030392
CHP
470–521
IPR030392
IPR030392
CHP
470–558
IPR030392
YP_009599754.1
1 559
Architecture
STR
STR 5-559
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009599754.1
1 559
Domain Start End Length (AA) Confidence
N-terminal 1 207 207 0,5933
Central domain 208 406 200 0,3655
C-terminal 407 559 152 0,9191
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-207
Central
208-406
C-terminal
407-559

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage BF
[NCBI] 		1962671 Uroviricota > Caudoviricetes > Eneladusvirus >
Host Serratia marcescens
[NCBI] 		615 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009599754.1 [NCBI]
Genbank nucleotide accession
NC_041917.1 [NCBI]
CDS location
range 185572 -> 187251
strand +
CDS
ATGAGTATAAGATTTAATCATGCCAGTAATACAGTTACTGGTACAGATGTAATCAAATTAGTGGTTGAAGGTGGGACACCAACTGCACCAAGACCATTTAGAATTGATTCATCTTCAGTTATTATGCCTAACAAACAATTACCTTCTGGTGAAGCAGGGGCATTAGTTTTTGATATTGTATCAAAAACATTAAAATATCATAATGGTATTTCATGGGTAGAGTTATTATCACAAGATGATATTCTAGCACCTATACAAATATCATTAACGGACATTTATAACCAATTAGCGAACCGTGTAAGTACTGTAACATATAGTACCAGTTCAGTACCTTCTGCGTCCGTAAGTGGAACAAACTTAAATATCATATTTCCATCATCAGGTGGAGGTGGTGGCACAGACATTCCTGGATTATTCACTTCTTCTCCACCAGGTTCTATCATGCAATATTCTTTGTCATCTGGTCAATCTGTTGCATCTATCAGAGAACAAATGAGTGGTGTTAGTGGTGGACAAAATGGTAGAAATGGTACAGCTTCAGCTCCATATGTAACAAAAACTGGATGGTGTTTTGCAGATGGTTCTTATTGGACATGGAATGGAGAAAGTGGTTCAGTAACCAAAGTTGTTCCAAATTTAAACCAAAATGCATATTTAAAAGGTATAACCACAACTGGTCTTACTAAGACAGATGCGGTAATTTCAGGTTCAGGTTCAATAGGAAATACGTCAATATCTTTCCCACAACACTATCATGGTACTGGTATGATGGTTGGATTATCTGGTGATTGGGGTGATGATGGATATTTCATTAGTAATAAAACATGGAATGATGGAATACAATATCAGGGAGTACAGATAACAGGTGATTTACAACGTAGAACAACTGGTCCAGTTAACGGTTCAGATGCTCGAACAGCATTAAGCACTTCTTTAGCAATATTCACTGGTTCAGATACTACTTCTCATACTCACAGCTTAAATAGTGTTGACGTAGCTCACTTTAATGTTGCTGTGGTATATAATATTGCAGAACCAAGCTCAGCACTTAATCAAAATGCTGGTGATCGCCGTTATGTATTAAAATCTGGTGATACTATGACTGGTTCATTGACTATCGCTAATAGTGCTGCAATTCAAGCAAATGATACAAATCTAGTACTATGGTTTAGAAATGCATCTGGTGGTGAACGTGCTGCAATATATCATGCATCTAATACTAATACTCTTAGATTGCGTACTGCTGGTGGTTCTGAAATGTCATTAAATAATGTAGGACTATTAAATGTTTCCTCAATTACTACTGGTTCAATTACAGGTTCATCATTGAACATATCTGGTACAGCAACAACTGGCCCATTAAATGTTAATGGACAAATAACAGCCACTGGTGATATTTGGGCATTCTCTGATGAAAGATTGAAAGAAAATATTAAACCTATTGAAAATGCCGTAGATATAATTAAAAGTATTCGTGGTGTAACTGGTAATTTTATTGGAGATGAACGTACACGTTCAATGGTTATTGCTCAAGAAGTCCAGAAGAACTTCCCTTGTGCTGTAACTGAAGATGTATCAGGATTCTTAAAAGTTAATTATGATGCCCTTATTCCATTGTTGTTAAATGCAGTCTCTACTATGAGTGAAGAAATTGCAAGTTTAAGGAGCATAATTAAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
c05f688bc5a2757a04b375bbaaa1e91050cb00bc1cf811c5609a8a0a1b001665
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5905
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence of Serratia marcescens phage BF Casey,E., Fitzgerald,B., Mahony,J., Lugli,G., Ventura,M. and van Sinderen,D. — — GenBank