Protein

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Genbank accession
YP_008240310.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 0,98
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,87
Protein sequence
MQYTGNLGLKKPEGTDVVNIDDLNQNFDILDVEVTKLATASEAGRMSAADKVKLDGIESGAQRNTVTSVNGKTGAVTLTSSDVGASPTGHTHAFAEITSKPTTLSGYGITDAIPASQKGSANGVASLDGSAKVPTPQLPNASTTQAGIVQLEDTLTSTSTTKAATANAVKQVNDTVVAHLADYVKHPAYAVASGSANAYSVTLTPAPTAYVDGMAVTVKINVDSTGASTLNVNGLGAKPLKKANGNDVTNLKANGVYTFRYNASTGNFILQGEGGAGNAQPAHVLSGKTFTNDSGEQTGTMPNRSAENFHMPALETAVWPGDKIFLRPPQGYYDGNSWVTASEPDLIASNIRQGVNIFGVVGTLVEGKKFASGTVTSSPNYGYFRVSNSGALHGYPYITVSGLTFQPTVIHVFVPDGNTDITIFDNRRNYLGSASADITMQNTVYLNNSDDAYVNSSGFRLPVTNPNTLFTWYAYE
Physico‐chemical
properties
protein length:476 AA
molecular weight: 49809,50750 Da
isoelectric point:5,51045
aromaticity:0,07773
hydropathy:-0,23571

Domains

Domains [InterPro]
DC_1296
ATT
1–92
DC_1296 IPR005068
DC_1594
STR
153–441
DC_1594
YP_008240310.1
1 476
Architecture
ATT
STR
ATT 1-92 | STR 142-441 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008240310.1
1 476
Domain Start End Length (AA) Confidence
N-terminal 1 302 302 0,8526
Central domain 303 465 164 0,3404
C-terminal 466 476 10 0,9945
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-302
Central
303-465
C-terminal
466-476

Taxonomy

  Name Taxonomy ID Lineage
Phage Thermus phage phi OH2
[NCBI] 		1352230 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Thermus thermophilus HB8
[NCBI] 		300852 Bacteria > Deinococcus-Thermus > Deinococci > Thermales > Thermaceae > Thermus
Host Geobacillus kaustophilus NBRC 102445
[NCBI] 		1220595 Bacteria > Firmicutes > Bacilli > Bacillales > Bacillaceae > Geobacillus
Host Geobacillus kaustophilus GBlys
[NCBI] 		1337888 Bacteria > Firmicutes > Bacilli > Bacillales > Bacillaceae > Geobacillus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008240310.1 [NCBI]
Genbank nucleotide accession
NC_021784.1 [NCBI]
CDS location
range 2517 -> 3947
strand -
CDS
GTGCAGTATACAGGGAACTTAGGTTTAAAGAAACCTGAAGGCACAGATGTCGTCAACATTGATGACTTGAACCAAAACTTTGACATTTTGGACGTGGAAGTGACTAAGCTAGCTACGGCATCAGAAGCAGGGCGAATGTCTGCGGCAGACAAAGTTAAACTGGATGGTATCGAGTCGGGCGCACAACGGAATACAGTAACGAGTGTCAACGGAAAAACCGGCGCTGTCACCCTCACCTCCTCTGATGTCGGAGCAAGTCCAACAGGGCACACACATGCATTTGCGGAGATCACAAGTAAACCGACAACGCTGTCTGGGTACGGAATCACAGACGCGATCCCGGCCAGCCAAAAAGGCTCGGCAAACGGCGTCGCCTCTCTCGACGGGAGTGCAAAAGTGCCGACGCCACAATTGCCAAACGCCAGCACCACACAAGCTGGTATCGTCCAACTCGAAGATACATTGACAAGTACTTCGACGACAAAAGCGGCGACGGCGAATGCGGTGAAACAGGTGAATGATACAGTTGTTGCGCATTTGGCTGATTATGTGAAGCATCCTGCTTATGCAGTTGCCAGCGGTTCGGCAAATGCTTATTCAGTCACTTTGACCCCTGCTCCTACTGCTTATGTAGATGGGATGGCTGTTACCGTAAAAATTAATGTGGATTCCACGGGAGCTTCTACTTTAAATGTGAATGGTCTAGGGGCAAAACCATTAAAAAAAGCTAATGGAAATGACGTAACAAATTTAAAAGCAAACGGCGTTTACACCTTTAGATACAACGCTTCAACAGGAAATTTTATCTTACAGGGTGAAGGGGGGGCTGGTAACGCTCAACCCGCACATGTATTGAGCGGAAAGACGTTCACAAATGATAGCGGAGAACAAACAGGAACAATGCCGAACCGTTCAGCAGAAAACTTTCACATGCCGGCCCTTGAAACTGCTGTTTGGCCGGGAGATAAAATTTTCCTAAGACCGCCACAGGGTTATTATGATGGAAACTCTTGGGTTACAGCGTCAGAACCGGATTTAATCGCTTCAAACATTCGACAGGGTGTAAATATTTTTGGTGTTGTTGGAACGTTAGTTGAGGGAAAAAAGTTTGCAAGTGGTACAGTAACATCATCCCCTAACTATGGATATTTTAGGGTCTCAAATTCAGGGGCTTTGCATGGTTATCCTTATATAACTGTAAGCGGATTAACATTTCAACCGACAGTCATACATGTTTTTGTACCGGACGGAAACACAGATATAACAATATTCGATAACCGACGGAACTATTTAGGAAGTGCCAGTGCTGATATTACGATGCAAAACACCGTATATCTCAATAATTCGGATGACGCTTATGTAAATTCATCGGGTTTTAGATTACCTGTAACTAACCCTAATACTTTATTTACATGGTACGCCTATGAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
ecacd1b8636b8265757fa107fce4f813dccad6816540b93b885291474e8b285d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7616
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of Siphovirus phi OH2 infected to Thermus thermophilus HB8 Doi,K., Martono,H., Nagayoshi,Y., Tsuda,K., Fujino,Y. and Ohshima,T. 2004-12-03 — GenBank