Protein

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Genbank accession
XYY22238.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MADFLATNEFAGTGAVMQVEVNFAGVRVDLPNQPAPYLEADDVKAAIVTPATNTTVEVVTPITLTQINALTFRTDVLVPVGQTLRVYRSTDIEFPIVDFVSLQVVTESDLDSQARQTLYAVMESSDNAAIAVRNSQTASETATQAFVLAEQAVETADAATVTADNAQAAAAAAVGTANAANSKADTALSNAAAAEAHAEAVEVLAQQAGDDAAAAAQSAADANTAANTAINTANGIDAKAQSALDASAAATTTANQAAATANGIAATANQANATANSANATAGQALTAANAAQAAVDGALTGKQDHTARLDQVATIATPATAGYYNLIGVNASGNLAPVTVSSVLAPLLSSATAGAFRTGLGLGTADNVQFATLTTATNVIANGYVAANTMGTVTGAQVAFTGGINAAGDIFGGTLRAKSGVVQTYAAASNANAHLWFYNTDGATRGIIYAGTDSAIRIQAGATGVAATFAPSGVTTLQALTTSRDSAAGQSFMFSPYAQLDGSMYGTSCLQLQGTGNGVANLGFHNAGRVAGALWLNTDGQLWWMTNGGTNLLMLTNGNLMGQIAGNMTADVIGSIAMMQNVSGTNMGLNSVVAGGSLRFSSHNQVSSQAGSGSWRCTTNANQGGVSTWVRYA
Physico‐chemical
properties
protein length:634 AA
molecular weight: 63542,39760 Da
isoelectric point:4,39197
aromaticity:0,05521
hydropathy:0,14732

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYY22238.1
1 634
Domain Start End Length (AA) Confidence
N-terminal 1 250 250 0,9809
Central domain 251 449 200 0,1455
C-terminal 450 634 184 0,9769
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-250
Central
251-449
C-terminal
450-634

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Ppr_SeaD2
[NCBI] 		3446273 No lineage information
Host Pseudomonas protegens Pf-5
[NCBI] 		220664 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas protegens

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYY22238.1 [NCBI]
Genbank nucleotide accession
PV763892.1 [NCBI]
CDS location
range 14798 -> 16702
strand +
CDS
ATGGCCGATTTCCTAGCCACGAACGAGTTCGCAGGTACTGGCGCGGTCATGCAGGTGGAGGTGAACTTCGCCGGTGTCCGGGTTGACTTGCCGAACCAGCCCGCTCCGTATCTGGAAGCGGACGATGTGAAAGCTGCAATCGTGACTCCGGCAACCAACACTACCGTCGAGGTGGTGACGCCGATCACGCTGACCCAAATCAACGCCCTGACCTTCCGCACCGACGTACTGGTGCCGGTTGGCCAGACCCTGCGCGTGTACCGCAGCACCGACATCGAGTTCCCTATAGTGGACTTCGTGTCGTTGCAGGTGGTGACTGAATCCGACTTGGATAGTCAGGCACGTCAGACGCTTTACGCGGTGATGGAGTCCTCGGACAACGCCGCAATCGCTGTACGGAACTCGCAGACTGCAAGCGAGACCGCGACCCAAGCATTCGTGCTGGCCGAGCAAGCCGTGGAGACCGCTGATGCGGCCACCGTCACGGCCGACAACGCTCAGGCTGCTGCGGCTGCTGCCGTCGGTACTGCAAACGCTGCGAACTCCAAGGCCGACACGGCTCTGTCGAACGCTGCCGCTGCTGAGGCGCACGCTGAGGCTGTAGAAGTGCTGGCCCAACAGGCCGGTGACGACGCCGCCGCTGCTGCACAGTCCGCTGCTGACGCGAACACCGCTGCCAACACCGCGATCAATACCGCCAACGGTATTGACGCCAAGGCGCAATCAGCTCTGGACGCATCCGCTGCCGCCACTACCACGGCGAACCAAGCGGCTGCTACCGCCAACGGCATTGCTGCTACAGCGAACCAAGCCAACGCCACTGCGAACTCCGCAAACGCTACGGCAGGTCAAGCGCTCACCGCTGCAAACGCCGCTCAGGCTGCTGTTGACGGTGCGCTGACTGGAAAGCAGGACCACACTGCCCGGCTGGATCAGGTGGCCACCATCGCCACGCCAGCCACCGCAGGTTACTACAACCTGATCGGCGTTAACGCATCGGGAAACCTCGCCCCTGTGACCGTGAGTTCGGTACTCGCTCCGCTGCTGAGTTCGGCAACTGCTGGCGCATTCCGTACTGGGTTAGGACTGGGCACTGCTGATAACGTGCAGTTCGCCACGCTGACCACTGCGACCAACGTGATCGCCAACGGCTACGTAGCCGCGAACACCATGGGCACTGTGACCGGTGCGCAGGTTGCGTTCACTGGTGGGATCAACGCTGCGGGTGACATCTTCGGAGGTACGCTTCGGGCGAAGTCCGGTGTTGTGCAGACTTATGCTGCGGCGTCTAACGCCAACGCCCACCTGTGGTTCTACAACACGGACGGGGCTACTCGTGGCATCATCTACGCTGGTACGGACAGTGCCATCCGCATTCAGGCGGGGGCGACTGGGGTCGCTGCTACATTCGCACCTAGCGGCGTTACCACGTTACAAGCACTCACCACCTCCCGTGACAGCGCGGCTGGGCAGTCCTTCATGTTCAGCCCGTACGCACAACTCGACGGCAGCATGTACGGCACCTCCTGCCTACAATTGCAGGGCACAGGCAACGGCGTGGCGAACCTCGGATTCCACAACGCTGGGCGTGTCGCTGGTGCGTTGTGGTTGAACACCGACGGGCAACTGTGGTGGATGACCAACGGCGGCACGAACCTGCTGATGCTGACGAACGGAAACCTCATGGGCCAGATCGCTGGGAACATGACGGCGGACGTGATTGGCAGCATCGCCATGATGCAGAACGTGTCCGGGACCAACATGGGCCTGAACAGCGTTGTGGCTGGCGGATCGTTGCGCTTCTCGTCTCACAACCAAGTTAGCTCACAGGCCGGTTCCGGCTCGTGGCGCTGCACCACCAACGCCAACCAAGGAGGCGTGTCCACTTGGGTACGCTACGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
515dbacfc013e53dde466a5663d3bb712935e18d181a709e9b0d018cc1a668ce
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7811
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Pseudomonads coordinate innate defense against viruses and bacteria with a single regulatory system Brinkley,D.M., Bertolli,S.K., Gallagher,L.A., Tan,Y., Motha de Silva,M., Brockman,A., Zhang,D., Peterson,S.B. and Mougous,J.D. — — GenBank