Protein

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Genbank accession
YP_009795317.1 [GenBank]
Protein name
putative tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,84
Protein sequence
MKKVLDSAIEYLDNTSRIDMACLVAIQLPSDGSSTQSYAYFTNYYKNISFRGNLYVSGKIRSISSHKQDRKLTIGSISFTVAGTDQDEVVKLVQNGVSFLDRSVVIYQAVIREDGSILPFSDDDTQDPFLYFNGKINSGGIKDNVTTSGNGSSVITWQCSNQFYDFDRVNGRYTDDATHRALEVVNGELVPSDSVKREEYKTDMGFYHSNKSVNILAKYQVQELRYRLNKKKKLFGLSASYSMEEYYETVTKTVDIDFNLAAKFLPVVYGVQNVPGIPIFADTEKNNPNIVYVIYAFCEGEIEGFLDIQVGDAPLICYDDSDASDRTCFGRKRVNGDTMHRLASGLPTSDPSTHGQEYIYNDGNGEIRFWTFHGKSNQEAAQVLVDLAATQGFYLQSMDNIGPEYWDSRYQLLDTAYVIARYTINENRADIPTINADVAGKKIRVYNENGLVSNQETSLNGIWQTLDYLTSDIYGAGIPLDLIPLDNMVAQAKLLDIIDTSYEVNWNTYWRYTGWKVRFAENRQVVQLNTIIDTAQSVFKNVQEVLDSYKGAINTLSGEYRITIEKWDANPRKINFLDTFGNLELSDTTGRNKFNSVQASLSDPSMGWKANSVTFFDSNFKKQDNGLDKKLQLSFGAITNYYTARSFAARELKKSRYSRTLSFTLPYKFIGIEPNDAISFTYDRYGWEDKYFLVDEVENNTDGSLDVVLQEYGEDVFINSPQTENNTTIPIETNTILPPRDVLYEAAVIADGVPGVNGYVSWLPSLTNSVTYYSVRTSYSADSFVVESINPNPNERMRFVIREQPEGLVTIEIRAVDITGKRSSPVTLSFMLNPATNLSMVSNFEVVNRVAGTNEFAGSDVQLRWSAIPETGIIEDLVYRVQVYSSSNMIREVLTSSLTYTYSLVFNKQDYQAEHQTLGINRNLDFRIRAEGSKGEQSIGWTNI
Physico‐chemical
properties
protein length:944 AA
molecular weight: 106543,55560 Da
isoelectric point:4,85879
aromaticity:0,11547
hydropathy:-0,37225

Domains

Domains [InterPro]
DC_0187
STR
217–943
DC_0187
IPR032876
ATT
595–697
IPR032876
YP_009795317.1
1 944
Architecture
STR
ATT
STR
STR 217-594 | ATT 595-697 | STR 698-943 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009795317.1
1 944
Domain Start End Length (AA) Confidence
N-terminal 1 311 311 0,9512
Central domain 312 526 216 0,2859
C-terminal 527 944 417 0,0033
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-311
Central
312-526
C-terminal
527-944

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage DU_PP_V
[NCBI] 		2041492 Uroviricota > Caudoviricetes > Demerecviridae > Hongcheonvirus > Hongcheonvirus DUPPV
Host Pectobacterium sp.
[NCBI] 		1913084 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009795317.1 [NCBI]
Genbank nucleotide accession
NC_047887 [NCBI]
CDS location
range 86273 -> 89107
strand -
CDS
ATGAAGAAAGTACTAGACAGCGCTATAGAATATCTAGATAATACAAGTAGAATAGACATGGCTTGTCTAGTAGCTATTCAACTACCTTCAGATGGTAGTTCCACCCAGAGCTATGCGTATTTTACTAACTACTATAAAAATATATCCTTTAGGGGTAACTTATATGTATCGGGTAAGATACGTTCTATATCCTCCCACAAACAGGACAGAAAGCTGACTATTGGATCTATATCCTTTACTGTAGCAGGCACTGACCAAGATGAGGTGGTTAAACTAGTTCAGAATGGTGTATCTTTTTTAGATAGATCCGTAGTTATATATCAAGCTGTTATTAGGGAAGATGGATCTATTTTACCTTTCTCTGATGATGACACGCAAGACCCCTTCCTATACTTCAACGGTAAGATCAATAGTGGAGGTATCAAGGATAATGTTACTACTTCTGGTAACGGGTCTTCAGTAATAACATGGCAGTGTTCCAACCAATTTTATGATTTTGATAGAGTAAATGGCAGATACACAGATGATGCAACTCATAGAGCCTTAGAGGTTGTTAATGGGGAGCTAGTACCTTCAGATTCCGTTAAGAGGGAAGAGTATAAAACAGATATGGGATTCTACCACTCCAACAAATCTGTTAATATCTTAGCTAAATATCAGGTACAAGAACTTAGATATAGACTTAATAAAAAGAAGAAACTGTTTGGTCTGTCTGCTAGCTATAGTATGGAAGAGTACTATGAGACTGTTACTAAAACAGTTGATATAGACTTTAACCTTGCTGCGAAGTTTCTACCTGTAGTATATGGTGTGCAAAATGTTCCGGGTATTCCTATTTTTGCAGATACTGAGAAGAATAACCCTAACATAGTGTATGTTATATACGCCTTTTGTGAAGGGGAAATAGAGGGATTCTTAGACATCCAAGTAGGGGACGCCCCTTTAATATGCTACGATGACTCTGATGCTTCTGATAGAACGTGTTTTGGTAGAAAGCGTGTTAATGGTGACACGATGCATAGGCTTGCATCAGGTTTACCTACATCCGACCCTAGTACTCATGGGCAGGAGTATATATATAATGATGGGAACGGAGAGATACGTTTTTGGACGTTCCACGGTAAATCCAATCAAGAAGCTGCGCAGGTATTGGTTGACTTAGCAGCTACTCAAGGATTTTACCTACAGTCTATGGATAACATAGGCCCCGAATACTGGGATAGTAGATATCAGCTGTTAGATACTGCATACGTAATAGCTAGGTATACCATTAATGAGAATAGAGCTGATATACCCACAATAAATGCGGATGTTGCAGGTAAAAAGATTAGAGTGTATAACGAAAACGGCTTAGTATCCAATCAGGAAACATCTCTAAACGGTATCTGGCAGACCTTGGATTACCTTACTTCAGATATTTATGGGGCAGGTATACCATTAGACCTAATACCGCTAGATAACATGGTTGCTCAAGCTAAACTACTAGACATTATAGATACTAGTTACGAAGTTAACTGGAATACATACTGGAGATACACAGGCTGGAAAGTACGTTTTGCTGAAAATAGACAAGTAGTGCAACTAAACACTATTATAGATACAGCCCAATCTGTGTTCAAGAACGTTCAGGAGGTTTTAGACTCATATAAGGGGGCTATTAATACGTTATCTGGAGAATACCGAATAACTATAGAGAAATGGGACGCTAACCCTAGAAAGATTAATTTCTTAGATACCTTTGGTAATCTTGAGTTATCTGATACTACTGGGCGTAATAAGTTTAACTCTGTTCAGGCCTCTCTTTCTGACCCTTCTATGGGGTGGAAAGCAAACTCTGTAACTTTCTTTGACTCTAACTTTAAGAAACAAGACAATGGTCTGGATAAAAAACTTCAGCTATCCTTTGGGGCAATAACTAACTACTATACTGCTAGATCTTTCGCAGCTAGAGAGCTCAAGAAGTCTAGATATAGCCGAACTTTATCTTTCACGCTTCCTTATAAGTTCATAGGTATAGAGCCTAATGATGCTATATCTTTCACTTACGATAGATATGGTTGGGAAGATAAGTATTTCTTGGTAGATGAGGTTGAAAATAACACAGACGGTAGTTTAGATGTTGTACTGCAAGAATACGGTGAGGATGTATTTATTAATTCTCCCCAAACGGAAAATAATACCACTATACCTATTGAGACAAACACTATACTACCTCCTAGGGACGTACTTTATGAAGCTGCGGTAATTGCAGATGGGGTACCCGGGGTAAACGGATATGTATCATGGCTTCCTAGCTTAACTAATAGTGTTACGTATTACAGTGTAAGAACATCATACTCTGCGGACAGTTTTGTAGTTGAGTCTATAAACCCTAATCCTAATGAGAGAATGAGATTTGTAATTAGAGAGCAGCCAGAAGGTCTAGTAACTATAGAAATACGAGCGGTAGACATTACTGGTAAGAGAAGCTCGCCTGTAACTCTATCTTTCATGCTAAATCCTGCTACTAACTTGTCCATGGTTTCTAACTTTGAAGTAGTTAACCGAGTAGCGGGTACTAATGAGTTTGCAGGATCTGACGTGCAGTTACGTTGGAGCGCTATTCCTGAAACGGGCATAATCGAAGACTTGGTTTACAGAGTCCAGGTATACTCTAGCAGTAATATGATACGTGAGGTTTTAACATCCTCCTTAACATACACCTACTCTCTAGTGTTTAACAAACAGGACTATCAAGCAGAGCATCAAACTCTCGGTATAAACAGAAACTTAGACTTTAGAATCCGAGCAGAAGGGTCTAAAGGAGAACAGTCAATTGGGTGGACTAACATATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
17ccfecf7c231366215ba910eb4260ca82fd0ae614d9ba375df3ef77b7e3c999
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2764
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of bacteriophage (DU_PP_V) infecting Pectobacterium spp. Park,T.-H. 2017-11-22 — GenBank