Protein

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Genbank accession
AFN39956.1 [GenBank]
Protein name
DUF2479 domain containing protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,85
Protein sequence
MTALRKINATLDLNRKSWNIERIEAVQGDIDSLMIAVQIVENGKLKDLTDYKPTFAVVLPGTVKYVIDDLHFSNEKMNEGYFEYTFVKEAFSVPGVYDTARFILQNEDGTELSGMPRFTYYVEKDPLQGKVVAESYISDFERLEQMIHAVELEIAELHDEVTSESVRLDSEIAALDEKINTETSKLQSEADDLQQQFDNLNPAQFAQKTVLDEHVNDADIHVTATDKTNWNAKETVEGAQAKADKALADAKAFFELSSSVQSVTLTPKNGFVASQTLVARYVKFGNRFLVLVGGIVGKGTGTGTGVCATTPTFLAPDTGWNKLYSAAQQSTAASNQANIYLSSGGDINIVGVGATDVNTGLDGIIYLTKEVTT
Physico‐chemical
properties
protein length:373 AA
molecular weight: 40824,17970 Da
isoelectric point:4,60023
aromaticity:0,08311
hydropathy:-0,21957

Domains

Domains [InterPro]
DC_1249
STR
1–368
DC_1249
G3DSA:2.60.40.3350
ATT
4–127
G3DSA:2.60.40.3350 Coil Coil
IPR018913
ATT
7–147
IPR018913
AFN39956.1
1 373
Architecture
ATT
STR
ATT 1-147 | STR 148-368 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Listeria phage LP-030-2
[NCBI] 		1173743 Uroviricota > Caudoviricetes > Psavirus >
Host Listeria monocytogenes serotype 4b str. F2365
[NCBI] 		265669 Bacteria > Firmicutes > Bacilli > Bacillales > Listeriaceae > Listeria

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFN39956.1 [NCBI]
Genbank nucleotide accession
JX120799 [NCBI]
CDS location
range 13885 -> 15006
strand +
CDS
ATGACTGCTTTAAGAAAAATAAACGCAACATTAGACTTAAATAGAAAATCTTGGAATATTGAGCGCATTGAAGCAGTTCAAGGTGATATTGATTCTCTGATGATAGCAGTTCAAATTGTCGAAAACGGTAAATTGAAAGACTTAACAGATTATAAGCCAACGTTCGCGGTAGTTTTACCGGGCACGGTCAAATATGTAATTGACGATTTACATTTTAGTAACGAAAAAATGAATGAAGGTTACTTCGAATACACATTTGTAAAAGAAGCATTTTCTGTTCCGGGAGTGTATGATACAGCCCGTTTTATTTTGCAAAATGAAGATGGGACAGAGCTATCTGGTATGCCTCGTTTTACGTATTATGTTGAAAAAGACCCGTTGCAAGGAAAAGTAGTAGCAGAAAGCTATATAAGTGATTTCGAGAGATTAGAACAAATGATACATGCTGTAGAATTAGAAATTGCTGAACTACATGATGAAGTGACAAGTGAAAGCGTGCGTTTAGATAGTGAAATTGCGGCACTTGATGAAAAAATCAATACAGAAACTAGTAAGCTTCAAAGTGAAGCAGATGACTTGCAACAGCAGTTTGATAACTTAAATCCCGCTCAATTCGCACAAAAAACTGTTTTGGATGAACATGTTAATGATGCTGATATTCATGTCACAGCGACTGATAAAACAAACTGGAATGCAAAAGAAACAGTAGAAGGCGCGCAGGCTAAAGCAGATAAAGCACTTGCTGATGCAAAAGCTTTTTTTGAACTATCTAGCTCTGTACAAAGTGTTACTCTGACGCCAAAAAACGGGTTTGTTGCCAGTCAAACACTTGTCGCTCGATACGTTAAATTCGGCAATAGATTTTTAGTGCTCGTTGGCGGCATTGTCGGGAAAGGCACTGGAACGGGAACAGGCGTATGCGCAACAACACCAACATTTTTAGCTCCGGATACAGGTTGGAACAAGCTTTATTCTGCTGCTCAACAGAGCACAGCAGCAAGCAATCAAGCGAATATTTATTTAAGCAGTGGTGGAGATATAAACATTGTTGGAGTCGGCGCTACGGATGTTAACACTGGTCTCGACGGCATAATTTATTTAACTAAAGAGGTGACAACATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
3f503e7fdfff78c4292931e9102bb3f1a54310f427ba7f978ee46d62cdde0b09
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8598
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative genomic and morphological analysis of Listeria phages isolated from farm environments Denes,T., Vongkamjan,K., Ackermann,H.W., Moreno Switt,A.I., Wiedmann,M. and den Bakker,H.C. 2014 24837381 GenBank