Protein

View in Explore
Genbank accession
QBX24895.1 [GenBank]
Protein name
tail fiber protein and host specificity
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MLELECRNLNLELINEDAIPFKSDQPLTFKQYAEKMDLLNFTKLSIGINEIESYTRTLEFTNSETKLARLLALLSKFNAEHEFKTFLNSDGTLKEFKINVYKEYDGDNYGVGKKQKNIILLGERHLTDITRTVDYDGLFTMLVPTSSQSVSDEKEKADEHGQTVTTVKNPDGSTTRTTVWKNSDGSQSKTVINTRVIKNADGSTTTIKRTEKANGSILETTTVRTSKGNTNSTTKVLKQATSNKDTGEKELIDLGSMPDWEVKNSEGEVEFYKRGASLYAPIAAKLYPSTFTTATQSDQWIRKDISYDAKTSEELEQMAFKDLKLHAYPAITYEIEGWTDLDIGDRVPIQDDEFSPILIIEARVTKQELCFTRPENSRTTYDNFKSLSNNLSADIQVRLAEMIEEVKPYTIKLSTDNGTTFKNGTGESVVKATLFKGEKQVYTDVSWRWALDGEVQVAMQYLLKAKDIENTAVLTVSGYVENKEVATTEVTVTNLVEPTSLVIKTSNGNLFKNNFINTTLTATLWRGGKEIDKDGKDYSYIWTKTDDEGNPDEIWNQDHSYSQKTIEITQKDVFRRAQFECNVEPLG
Physico‐chemical
properties
protein length:587 AA
molecular weight: 66344,41010 Da
isoelectric point:5,02749
aromaticity:0,08518
hydropathy:-0,61210

Domains

Domains [InterPro]
DC_1254
STR
1–501
DC_1254
DC_0977
RBD
494–584
DC_0977
QBX24895.1
1 587
Architecture
STR
RBD
STR 1-501 | RBD 502-584 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage Javan214
[NCBI] 		2548050 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus equinus
[NCBI] 		1335 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBX24895.1 [NCBI]
Genbank nucleotide accession
MK448876.1 [NCBI]
CDS location
range 35368 -> 37131
strand +
CDS
ATGCTTGAGCTAGAATGTCGTAATCTTAACCTTGAACTTATTAATGAAGATGCGATTCCTTTTAAATCTGACCAGCCGTTAACGTTTAAACAATACGCTGAGAAGATGGATTTGCTTAATTTTACGAAGCTAAGTATTGGGATTAATGAGATTGAGTCTTACACACGAACACTGGAGTTCACAAATTCTGAAACTAAGTTAGCACGTCTGCTAGCTTTGCTTTCTAAATTCAATGCTGAACATGAGTTTAAGACATTCTTGAACTCAGACGGGACACTGAAAGAGTTTAAGATAAATGTTTACAAAGAGTATGACGGTGATAATTACGGAGTTGGTAAAAAGCAAAAAAATATCATTTTGTTAGGGGAACGTCACCTAACTGATATTACACGTACAGTTGATTATGACGGCTTGTTTACAATGCTTGTTCCTACAAGCTCACAGAGTGTATCTGATGAAAAAGAAAAGGCTGATGAACATGGTCAAACGGTAACTACGGTGAAAAATCCAGATGGTTCGACTACACGAACAACAGTTTGGAAAAACTCAGATGGTTCACAAAGTAAGACGGTCATCAATACAAGAGTGATTAAAAACGCTGATGGTAGTACCACAACCATTAAACGTACTGAGAAGGCTAATGGTTCTATTCTTGAGACAACAACTGTCCGTACATCAAAAGGTAATACTAATTCTACGACAAAAGTATTAAAACAAGCGACTAGTAATAAGGATACTGGTGAGAAAGAGCTTATTGACTTAGGGTCAATGCCTGACTGGGAAGTAAAAAACAGTGAAGGTGAGGTTGAGTTTTATAAACGAGGAGCTTCACTATATGCTCCAATAGCTGCAAAACTATATCCGTCTACTTTCACAACAGCGACTCAGTCGGACCAATGGATTCGTAAAGATATCAGCTATGATGCTAAAACTTCTGAGGAGTTGGAGCAGATGGCGTTTAAGGATTTAAAACTTCATGCTTATCCAGCTATTACATATGAAATTGAGGGATGGACTGACCTTGATATTGGTGATAGGGTGCCAATTCAAGACGATGAGTTCAGCCCTATTTTGATTATCGAAGCCAGAGTTACAAAACAAGAGCTCTGTTTTACAAGACCGGAAAATAGTCGCACAACTTATGATAATTTTAAATCGTTAAGTAATAACCTTTCTGCTGATATTCAAGTACGTTTGGCTGAGATGATTGAAGAAGTCAAACCATACACTATTAAATTGTCAACAGATAATGGGACGACTTTTAAAAACGGTACTGGGGAGAGTGTCGTGAAAGCTACTCTTTTTAAAGGAGAAAAACAAGTCTACACAGATGTGAGCTGGCGCTGGGCTCTCGATGGTGAGGTTCAGGTTGCAATGCAATATCTATTGAAGGCAAAAGATATTGAGAATACAGCGGTGCTTACTGTATCAGGATATGTTGAAAACAAAGAAGTAGCGACTACAGAGGTTACTGTTACTAACTTGGTTGAGCCAACAAGCCTAGTTATCAAAACAAGTAATGGGAATCTATTCAAAAACAATTTTATCAACACTACGCTTACAGCAACACTTTGGCGTGGTGGCAAAGAAATTGATAAGGATGGCAAAGATTATAGCTATATTTGGACAAAAACAGATGATGAAGGTAATCCTGATGAAATCTGGAATCAAGACCATAGCTACTCACAAAAAACAATTGAAATCACACAAAAGGATGTATTTAGAAGAGCTCAATTTGAATGTAATGTTGAGCCCCTCGGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0cd6a8e425c8aea3a3f501859121153b95801c50fc70df3305a5f3e068943b75
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8164
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophages and satellite prophages are widespread among Streptococcus species and may play a role in pneumococcal pathogenesis Rezaei Javan,R., Ramos-Sevillano,E., Akter,A., Brown,J. and Brueggemann,A.B. 2018-12-20 — GenBank