Protein

View in Explore
Genbank accession
WKV29273.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,80
Protein sequence
MITPELIPSPFAAQGDKDPIPQTSSTGFANLRDGYTPDYEISLASNNPQAKAVERKIQNQLFFIATQNAQAWQRQMAPPWFQGMPGGYEQNAEVVRVGNDGIMRRYRSMVNANASDPLSSTTWEEQPAWSAMRSNIPMPAGGPGLSSGGEVITTGRNFNDLLNGTWEFFSDSVVIASQNAPVYPASAGAAAGMLEAKSWVSGANTFCVQRYTDRVGNVAVRGLNAGAWTNWMYAVNVMALQQGRVTYGVAAGSANAYTLTLVPQLQGGLVDGMILRVKFNTMNTGASTINVSGLGAKAIVGAANFPLTGGELGQGLIAELVFDAAGDRWRILAGASRIQVGNADQDYQAPSWKQVKDYVASQKLTEVDWTDVVNKPNVAIQDTTPWFANLELSDARPFIDFHFNSNRAKDFDYRLISEADGSLAFYSRQGSAGPTQDILFNRNSVTFFQPRLDVAKNLAYIANSGPLWQNTTADQPGWKFTFAQGVDANNNAVIAVNTTNPDGSYRSQVMRWDWASTNVIFNNRPLFAGQYTPWDSGNFDPSTKLTVSATNQIAGPTGIRNTNGNTGNMNTWGSGSTTASYGNAAIQIFGKGGGEPAAIYFDNSQTGWYLGMDKDGQLKRAGWSLGNNSYVITDESNIRTHINTMAARPIWGNVEFWGPWNFDPNLKLTLNAFNDSSYTRMTNSGAKDVGIASMTSYADAAMSFFNYEASNPTGPRAAVISFVRNGSRGVLFGLDSDNKLKWGGYSLGAVAFEIADSNNLMSLWSSHAAAPNWNGQTIWRSGNFNPDTKATLAARNTTSSPTIFSYGASGIASTGQVGALVVENNSVTNTAAAITFHSPQKYQVNFGLDADNVVKIGGGTMGGVAYPIIHSGNYNNYINQALVQVGLGGVGSYAILAVYDTSAPASSVGPGTILDSSKLFYSSCDSTYRSSARPTGTWRCMGYVYNRDSTNGDSASLFQRVT
Physico‐chemical
properties
protein length:962 AA
molecular weight: 103391,49470 Da
isoelectric point:5,76048
aromaticity:0,10915
hydropathy:-0,27994

Domains

Domains [InterPro]
DC_0009
ATT
1–210
DC_0009 DC_1924
cd19958
STR
152–231
cd19958 DC_1924
DC_1788
STR
167–686
DC_1788
WKV29273.1
1 962
Architecture
ATT
STR
RBD
ATT 1-210 | STR 211-686 | RBD 687-962
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WKV29273.1
1 962
Domain Start End Length (AA) Confidence
N-terminal 1 399 399 0,9000
Central domain 400 605 207 0,3159
C-terminal 606 962 356 0,7920
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-399
Central
400-605
C-terminal
606-962

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeM_P1420
[NCBI] 		3061309 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa PA14
[NCBI] 		652611 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WKV29273.1 [NCBI]
Genbank nucleotide accession
OQ968807.1 [NCBI]
CDS location
range 32221 -> 35109
strand +
CDS
GTGATCACACCCGAACTGATACCCAGTCCGTTTGCTGCGCAGGGCGACAAAGACCCGATTCCGCAGACCTCTTCCACTGGTTTTGCCAACCTTCGCGACGGCTACACGCCGGACTACGAAATCAGTCTGGCGTCGAACAACCCGCAGGCCAAAGCGGTCGAGCGGAAAATTCAAAACCAACTCTTCTTCATCGCGACCCAGAACGCACAGGCGTGGCAGCGACAAATGGCACCGCCGTGGTTTCAGGGCATGCCTGGCGGCTACGAACAGAATGCAGAAGTCGTGCGCGTCGGAAATGACGGCATAATGCGGCGTTATCGTTCCATGGTGAATGCCAATGCGAGCGACCCTCTCAGCAGCACGACTTGGGAAGAACAACCCGCATGGTCGGCGATGCGCTCCAACATCCCGATGCCGGCCGGAGGCCCAGGCCTATCTTCTGGCGGAGAAGTCATCACGACCGGCCGCAACTTCAACGACCTGTTAAATGGGACGTGGGAGTTCTTCTCTGATTCAGTGGTTATCGCTTCTCAGAATGCCCCCGTATATCCGGCTTCCGCTGGTGCCGCTGCTGGCATGTTGGAGGCGAAATCTTGGGTGTCCGGAGCCAATACGTTCTGCGTCCAACGCTACACTGATCGCGTCGGGAACGTCGCTGTGCGCGGGCTTAATGCCGGAGCGTGGACCAACTGGATGTATGCGGTAAACGTCATGGCCCTTCAACAAGGTCGGGTCACCTATGGAGTCGCGGCCGGATCGGCGAACGCTTACACGTTGACGCTAGTTCCGCAGCTCCAAGGCGGCCTGGTGGATGGCATGATTCTTCGGGTCAAGTTCAATACCATGAACACCGGCGCCTCCACCATCAACGTCTCCGGACTCGGCGCCAAAGCCATCGTCGGCGCGGCCAACTTCCCTCTCACCGGCGGCGAACTTGGCCAAGGACTCATCGCTGAGCTTGTATTCGACGCAGCAGGCGACCGCTGGAGAATCCTCGCAGGCGCGTCACGCATCCAAGTTGGCAACGCCGATCAGGACTACCAGGCGCCGAGTTGGAAGCAAGTTAAAGACTATGTCGCGTCCCAAAAGCTCACCGAAGTGGATTGGACGGATGTCGTCAACAAGCCGAACGTCGCTATCCAAGATACAACGCCGTGGTTCGCCAATCTGGAGCTGTCCGATGCTCGGCCTTTCATCGATTTCCACTTCAACAGCAATCGCGCCAAAGATTTTGACTATCGGCTGATATCTGAAGCAGACGGATCGCTGGCTTTCTATTCGCGGCAGGGGTCTGCTGGGCCTACCCAGGACATCCTGTTCAACCGAAATTCCGTGACTTTCTTCCAGCCGCGACTCGATGTGGCGAAAAACCTCGCGTACATCGCGAACTCTGGCCCCCTTTGGCAGAACACCACCGCCGATCAGCCCGGTTGGAAATTCACCTTTGCACAAGGCGTGGACGCGAACAACAACGCGGTGATCGCAGTCAATACCACCAATCCGGACGGTTCCTATCGTTCACAGGTCATGCGATGGGACTGGGCGTCCACGAACGTCATATTCAACAACCGTCCGCTCTTCGCCGGTCAATACACCCCTTGGGATTCTGGGAACTTCGATCCTTCCACCAAGTTGACGGTGAGCGCCACGAACCAAATCGCCGGCCCAACGGGGATTCGGAATACCAACGGCAACACCGGCAACATGAACACCTGGGGTTCCGGCTCCACGACGGCATCCTATGGCAATGCTGCCATTCAAATCTTCGGAAAAGGGGGCGGTGAGCCTGCCGCGATCTATTTCGACAACTCCCAGACCGGATGGTATCTGGGCATGGACAAGGATGGACAGCTCAAGCGGGCCGGCTGGTCGCTCGGCAATAACTCCTATGTGATCACCGACGAATCCAACATCCGAACCCATATCAACACAATGGCTGCGCGCCCGATTTGGGGGAATGTCGAGTTCTGGGGTCCGTGGAACTTCGATCCGAATCTTAAACTCACTTTGAACGCTTTCAATGATAGCTCATACACCAGGATGACCAACAGCGGCGCGAAAGACGTTGGTATCGCGTCCATGACGAGTTATGCTGATGCGGCCATGTCATTCTTCAACTATGAAGCCTCGAATCCGACCGGGCCGCGCGCGGCCGTTATTTCGTTCGTGAGAAATGGATCGCGTGGAGTGCTATTCGGCTTGGATTCTGACAACAAGCTGAAGTGGGGCGGATATTCCCTAGGGGCCGTCGCGTTCGAGATTGCCGACTCCAACAACCTCATGAGCCTGTGGTCATCCCACGCTGCCGCGCCGAACTGGAACGGGCAGACCATCTGGAGGTCGGGAAACTTCAACCCAGACACCAAGGCGACTTTGGCAGCTCGCAATACGACGTCATCCCCTACAATATTCAGTTATGGGGCGTCCGGAATCGCATCAACCGGACAGGTCGGTGCGTTGGTTGTGGAAAACAACAGCGTCACCAATACCGCAGCCGCCATCACGTTCCATTCGCCGCAGAAATATCAGGTCAACTTCGGCCTGGATGCGGACAACGTGGTAAAGATCGGTGGCGGCACAATGGGCGGCGTAGCATATCCCATCATCCACTCCGGCAACTACAACAACTACATCAACCAGGCGCTGGTTCAGGTGGGTCTTGGCGGAGTCGGTTCCTACGCGATCCTTGCCGTGTACGATACTTCCGCACCGGCATCGTCCGTTGGACCTGGTACCATCTTGGACAGTTCCAAGCTGTTCTATTCGTCCTGCGATTCGACCTATCGCAGCAGCGCCCGTCCGACGGGCACCTGGCGCTGCATGGGGTATGTGTATAACCGAGACTCCACCAACGGCGACTCGGCATCCCTATTCCAGCGGGTAACGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
cf390d9ddae4a00e66f4cda57b4176794cc9d7b3b29021246ad21d6dbb50e179
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6114
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome of the Pseudomonas phage vB_PaeM_P1420 Pires,D.P., Ferreira,M., Costa,M.J., Brandao,A., Azeredo,J. and Santos,S.B. 2015-10-29 — GenBank