Protein

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Genbank accession
AVH85347.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect2
Probability 0,81
Protein sequence
MALKYAEGFETSVDDSDIRARGWLYAPTKRYAGLPPSKTAAVGSIGLRRFVNNGSDAATTVGATGAADLGYYNTGITVNQAWSAGGFTFGSSATHYSGSMVQIGAVGTGGPSGQALGCIDFDGTNYWACTSATKIAKSTDFITWTNTTATPTGLTLSSTVSFMGSGVVMVVPQTATPTTLSVAYTSNGGTSWSTQTLATGISTTTGAQYGIGFATGNPTYPHAILIGISDNSAANGLYIGTLGGTFTQVIGGTAYTMGFFVPRPVVINGYIYVTDASNNATSANFYSAPVSGAINTAGAWTKWSLGNVPNPSQISYFQAANVFMISSVTNGLFTIPNTGGTGTPTPPTSATTASNPYSAAGVFGIASSGSTAVIFPDVFNSISANNTVFTSTDASTWTPQFKIWPDLGGTNRNGWCTVFYDGTQYVAVGSVGSTAHSQIICTTDDGVNNWRIRYASDTSSNGTTGGFSGLGVCTATAAPVSGSTWTAGTTAAWLNASVPSAGSSTISFFTTSNSATAASTAAVSTSTTLTHYYEIKAVATATANTFNISWYVDGALKATSTSILLGSSTTDTTSLLILNIPRCGAWQQFDDMYLTLDNGTGLQGPAGPIYITARRPTTDVQDQWSPNGTATNSTATNQTALSSRKDRYSSTYTDGAKDVYSSTDSTPSSYKVKAVQIEGYFSQLSTVAPTAKLSLISSGNQVDASTATVNSSQVFTSAIVEQNPNGNVAWTPGTVNSSQFAITKVT
Physico‐chemical
properties
protein length:746 AA
molecular weight: 76803,57900 Da
isoelectric point:5,38131
aromaticity:0,10188
hydropathy:-0,02668

Domains

Domains [InterPro]
DC_0637
STR
430–745
DC_0637
AVH85347.1
1 746
Architecture
STR
STR 430-745 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AVH85347.1
1 746
Domain Start End Length (AA) Confidence
N-terminal 1 43 43 0,6416
Central domain 44 310 268 0,7945
C-terminal 311 746 435 0,6985
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-43
Central
44-310
C-terminal
311-746

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RsoM2USA
[NCBI] 		2070027 No lineage information
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVH85347.1 [NCBI]
Genbank nucleotide accession
MG752970 [NCBI]
CDS location
range 293977 -> 296217
strand +
CDS
ATGGCTTTAAAGTACGCAGAGGGATTTGAAACATCTGTAGATGATAGTGATATTCGCGCACGCGGATGGTTGTACGCACCTACGAAGCGTTATGCAGGTTTACCTCCTTCAAAAACGGCAGCCGTTGGATCAATAGGTCTACGTAGATTTGTGAATAACGGCAGCGATGCTGCCACCACTGTTGGGGCGACCGGTGCAGCTGATTTGGGGTATTACAATACGGGTATAACGGTTAATCAGGCCTGGTCCGCCGGAGGTTTTACATTTGGATCGTCTGCCACTCATTATAGCGGCTCTATGGTTCAGATAGGTGCAGTAGGAACTGGTGGTCCATCCGGTCAAGCACTAGGATGTATAGATTTTGATGGTACAAATTATTGGGCTTGTACGTCTGCGACTAAAATTGCAAAATCTACCGATTTTATTACGTGGACGAATACTACAGCAACCCCAACGGGCTTAACTCTATCATCGACGGTATCGTTCATGGGTTCCGGTGTAGTGATGGTTGTTCCTCAAACTGCAACACCAACCACGTTAAGTGTTGCATACACTAGTAACGGTGGAACTAGCTGGTCCACGCAAACACTGGCCACTGGAATTAGTACAACAACAGGTGCTCAATATGGAATTGGATTTGCAACTGGAAATCCAACATATCCCCATGCAATCTTAATTGGGATTAGTGATAACTCTGCGGCAAATGGTCTCTATATAGGAACTCTGGGTGGAACGTTTACCCAAGTAATTGGTGGTACGGCTTACACGATGGGATTCTTTGTTCCTAGACCTGTGGTTATTAATGGATACATTTATGTAACTGATGCGTCAAATAATGCGACATCCGCGAATTTTTATTCTGCACCCGTATCCGGGGCAATAAACACAGCGGGAGCCTGGACTAAATGGTCTCTTGGAAATGTGCCTAACCCTTCTCAAATATCGTATTTTCAGGCGGCAAACGTTTTCATGATATCATCTGTCACGAACGGTTTGTTCACTATTCCTAACACTGGTGGTACAGGTACTCCTACTCCCCCAACGTCGGCAACAACTGCATCGAATCCTTACTCAGCAGCAGGAGTATTCGGAATAGCATCCAGTGGATCTACTGCGGTTATTTTTCCAGATGTGTTTAATTCTATCAGTGCTAACAATACGGTTTTCACATCAACCGATGCGTCAACCTGGACTCCTCAATTCAAAATCTGGCCAGACTTGGGTGGAACGAATAGAAATGGTTGGTGTACGGTGTTTTATGACGGGACGCAATATGTTGCTGTAGGATCTGTAGGATCTACAGCCCACTCCCAAATCATATGTACGACGGATGATGGTGTAAACAATTGGCGTATCAGATACGCATCTGATACTTCAAGCAATGGTACAACAGGTGGATTTAGTGGATTGGGTGTGTGCACTGCAACTGCTGCTCCGGTATCGGGGTCAACATGGACAGCGGGAACCACTGCTGCATGGTTAAATGCGAGCGTCCCTTCTGCAGGATCATCTACTATTAGCTTTTTCACTACGTCAAACAGTGCAACCGCGGCATCCACCGCAGCTGTTTCGACATCCACTACGCTAACTCATTATTACGAAATAAAAGCGGTTGCCACTGCTACTGCTAATACATTTAATATCAGTTGGTATGTAGATGGGGCATTGAAAGCCACAAGTACAAGTATCCTTCTTGGATCTTCTACAACGGATACTACAAGTTTGCTGATACTCAACATTCCTAGATGTGGTGCTTGGCAGCAATTCGATGATATGTACTTAACGCTTGATAACGGCACCGGATTACAAGGACCTGCGGGCCCCATCTACATTACAGCACGCAGACCGACAACGGATGTGCAGGATCAATGGTCTCCTAATGGCACGGCAACAAATTCAACTGCAACCAATCAGACTGCATTAAGCAGTAGAAAAGACAGATATTCTTCAACATATACTGATGGCGCAAAAGATGTTTATTCGTCCACCGATTCTACTCCATCCAGTTATAAAGTAAAAGCAGTTCAGATAGAGGGATATTTTTCGCAATTGAGTACTGTTGCTCCAACTGCTAAATTGAGCTTGATTAGTAGTGGCAATCAGGTTGATGCGTCAACTGCAACGGTAAATAGCAGTCAGGTATTCACATCGGCGATAGTTGAACAAAATCCAAATGGTAACGTTGCTTGGACTCCAGGAACGGTAAATAGTTCACAGTTTGCAATTACTAAGGTGACTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6f50360bd04dfb666c31ad64c3b928e66b66e1798ffd37695b0d853e57504b0c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6108
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome of RsoM2USA, the largest bacteriophage infecting plant pathogenic bacterium Ralstonia solanacearum Ahmad,A.A., Addy,H.S. and Huang,Q. 2021-09-27 — GenBank