Protein

View in Explore
Genbank accession
XOG07484.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MALNFTTITENNVIRDLTIQVNNIGEELTKERNIFDITDDLVYNFNKSQKVKLTDDKGLAKVYRSTTVLRDIKEPGYYYINARALAMMTDKPDMESIDVLLYVMPLESSDRVVQHLYTLSTNNNQIRTMYRYVSGNSSSEWQFIQGLPSNKNSIISGSNIDDLTSPGVYFVTGMTGGMPSGVDSGFLDLSIDANDNRLAKLTDSETGKEYTSIKKPIGVYTEWKKELEPKDMQKYLLSNIEDDGRLTFPLMVYASDNKTFQQAVVDHIDRTGQTTFTFYVQGGVTGSPMPNSCRGLFISDTSNTDSLHGIYNAVGTDGRDVTGSVVGSTWVSPKTAPSYKELWTGAQSFSSTGTTKNLADDISNYSYVEVYTKHKTAEKTKGNDDSGTICHKFYLDGSGTYVCSGTFVSGDRTDTKPPITEFYRVGINFSGTTWKIVDSAVQNSKTQYVTRIIGINMP
Physico‐chemical
properties
protein length:458 AA
molecular weight: 50883,27130 Da
isoelectric point:5,23353
aromaticity:0,09825
hydropathy:-0,44607

Domains

Domains [InterPro]
DC_1773
STR
9–245
DC_1773 IPR057110
DC_0448
STR
195–457
DC_0448
XOG07484.1
1 458
Architecture
STR
STR 9-458
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XOG07484.1
1 458
Domain Start End Length (AA) Confidence
N-terminal 1 216 216 0,7961
Central domain 217 415 200 0,0671
C-terminal 416 458 42 0,9963
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-216
Central
217-415
C-terminal
416-458

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage OPT-SC01
[NCBI] 		3239051 Viruses > unclassified bacterial viruses >
Host Staphylococcus xylosus
[NCBI] 		1288 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOG07484.1 [NCBI]
Genbank nucleotide accession
PQ046924.1 [NCBI]
CDS location
range 84825 -> 86201
strand +
CDS
ATGGCATTAAATTTTACTACAATAACGGAAAACAATGTTATTAGAGACCTGACTATTCAGGTCAATAACATTGGAGAAGAATTAACAAAAGAAAGAAATATATTTGACATTACGGATGATTTAGTTTATAATTTTAATAAATCACAAAAAGTTAAATTAACAGATGATAAAGGGTTAGCTAAAGTATATAGGAGTACAACTGTTCTTAGAGATATAAAAGAACCAGGGTATTATTATATAAATGCAAGAGCATTAGCAATGATGACAGATAAACCTGATATGGAATCAATAGATGTTTTACTTTATGTAATGCCTTTAGAATCCTCTGATAGAGTGGTACAGCACTTGTATACCCTCTCTACCAATAATAATCAGATTAGAACCATGTATAGATATGTTTCAGGTAACTCAAGTTCAGAATGGCAATTTATTCAAGGACTACCAAGTAATAAAAATTCTATTATATCAGGCTCTAATATAGATGATTTAACTTCTCCAGGTGTATACTTTGTGACAGGTATGACAGGAGGTATGCCTAGTGGTGTAGATTCAGGTTTTTTAGATTTAAGTATAGATGCTAATGATAATAGATTAGCTAAATTAACTGATTCTGAAACAGGTAAAGAATACACTAGTATTAAAAAACCTATAGGTGTATATACAGAGTGGAAAAAAGAATTAGAGCCAAAAGATATGCAAAAATATTTATTGAGTAATATAGAAGATGATGGTAGATTAACATTTCCATTAATGGTTTATGCCTCAGACAATAAGACATTCCAACAAGCTGTTGTAGACCACATAGACAGAACAGGACAAACAACCTTTACTTTTTACGTTCAAGGAGGAGTAACTGGTTCACCTATGCCTAATAGTTGTCGTGGATTATTCATCTCAGATACATCTAACACTGACAGTCTACATGGTATTTATAATGCAGTAGGGACAGATGGTCGGGATGTAACAGGTTCAGTAGTAGGGAGTACTTGGGTTTCCCCGAAAACAGCCCCATCCTATAAAGAATTATGGACGGGAGCACAATCATTCTCATCTACAGGTACCACTAAGAATCTAGCGGATGACATTAGTAATTATTCTTATGTAGAGGTTTATACTAAACATAAGACAGCAGAGAAGACTAAAGGTAATGATGATTCAGGTACAATTTGTCATAAATTCTACTTGGATGGTAGTGGTACCTACGTTTGCTCAGGAACTTTTGTTTCAGGAGATAGAACAGATACAAAACCACCCATTACAGAGTTCTATAGAGTAGGTATTAACTTCTCAGGAACAACTTGGAAAATTGTAGATAGTGCAGTACAAAATAGTAAAACTCAATATGTTACAAGAATTATAGGTATTAATATGCCATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
3cc2a1d56245b70e910abcb5d5943423d8933177d85300dc68d8e49e641fd332
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8168
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and therapeutic potential of newly isolated bacteriophages against Staphylococcus species in bovine mastitis Kim,D., Kim,Y., Cho,J.-H., Ko,S. and Lee,G.M. — — GenBank