Protein

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Genbank accession
QXN60146.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MPIKKRGSGIPLRGSGGGGGKITVNDHTGEAISTGVTTLEWQTLADFGFTVNVDPDNPSKVIVGAAPVFADPIQWYTAQNTDVRVSDSDLSEVDTYFTGGFEGTVVKGSTSDFIFSSTTGRGFGADAKLSVKTYHAGVLIDDTLFTCNGNGSQVEGNVSINITGYAPDGDGSANVGGIGVTVNGDGLIGSTNSGMCRVEISFLEHKWGERRNLNQDVFRDKNTETPVISGAPSVQEHTDTTKRRIKYLSGIGYYTTDSMFTIDVPTIDGHNEDSSRPSESLMVDSSNFGVTPYTTSPWTDTISWRDFDNTDTTDGVNYTEDVAINEVNYRHVGNALVGNIVRDSWGAANNKDSNTLKICVDTHSNPSTTLVEYFDEENMRLASDYNTVWDSERYCSDGEAVVFNGSLHHGADLPRVLESTTGSLGTAGSLSTYLPDQKVDGTVRQQPNYAVHNRPAVFFRKFLTGDSNSYSSFTMNLTTNGELSSQLSSGKLKIYIWKLGSVDPTSINLNLPPNYSAVNPNTSTVNSLWGHADYNFVAFDDGVSQTAAGSGCIFSQTGNILTLTFGGYSVEDGVLVRFELEKGVRIDEVGVNFV
Physico‐chemical
properties
protein length:594 AA
molecular weight: 63940,30750 Da
isoelectric point:4,60995
aromaticity:0,09259
hydropathy:-0,34646

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QXN60146.1
1 594
Domain Start End Length (AA) Confidence
N-terminal 1 259 259 0,2165
Central domain 260 458 200 0,2208
C-terminal 459 594 135 0,9522
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-259
Central
260-458
C-terminal
459-594

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage HNL01
[NCBI] 		2853169 No lineage information
Host Aliivibrio fischeri ES114
[NCBI] 		312309 Pseudomonadota > Gammaproteobacteria > Vibrionales > Vibrionaceae > Aliivibrio > Aliivibrio fischeri

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QXN60146.1 [NCBI]
Genbank nucleotide accession
MZ456352.1 [NCBI]
CDS location
range 61294 -> 63078
strand -
CDS
ATGCCAATCAAGAAAAGAGGATCTGGAATCCCTTTACGTGGGTCAGGTGGTGGTGGCGGTAAGATTACTGTTAATGACCATACAGGTGAAGCCATATCTACAGGAGTTACTACCTTGGAGTGGCAAACTCTTGCAGATTTTGGGTTCACCGTTAATGTAGATCCTGACAACCCTAGCAAGGTAATCGTGGGTGCTGCCCCTGTTTTTGCTGATCCTATACAATGGTACACTGCTCAAAATACAGATGTCAGAGTTTCCGACAGTGACCTAAGCGAGGTAGATACTTACTTTACAGGGGGTTTTGAAGGTACCGTGGTTAAGGGCTCTACTTCAGATTTTATATTCAGTAGTACCACTGGACGAGGTTTTGGTGCAGATGCTAAATTATCTGTCAAAACTTACCATGCAGGGGTATTAATAGATGACACATTATTCACTTGTAATGGTAACGGGTCTCAGGTGGAAGGTAATGTAAGCATAAACATTACAGGTTATGCACCTGACGGAGATGGTAGTGCCAATGTCGGTGGTATCGGAGTAACTGTAAACGGAGATGGTCTGATTGGAAGTACCAATTCAGGGATGTGTCGTGTAGAGATTTCATTCTTAGAACATAAATGGGGTGAGCGTAGAAACCTTAACCAAGATGTGTTCAGAGATAAGAATACAGAAACCCCTGTAATCTCTGGAGCACCTTCCGTACAAGAACACACAGATACTACCAAACGTCGTATAAAATATTTATCGGGGATCGGGTACTACACTACAGACTCTATGTTTACTATAGATGTGCCTACTATTGATGGGCATAATGAGGATAGTTCTAGACCAAGTGAATCTCTGATGGTAGATAGCTCCAATTTCGGAGTAACACCTTACACAACATCTCCTTGGACTGATACTATATCTTGGAGAGATTTTGATAATACAGATACTACTGACGGTGTAAATTATACAGAAGATGTAGCCATTAACGAGGTGAACTATAGGCATGTGGGAAATGCTTTAGTAGGTAATATTGTTAGGGATAGCTGGGGTGCTGCAAACAATAAAGATAGTAATACTTTAAAGATTTGTGTAGATACACATTCAAACCCTAGTACAACTCTTGTAGAATATTTCGATGAAGAGAATATGAGACTAGCCTCTGATTACAACACTGTATGGGATAGTGAGAGATACTGTTCCGATGGAGAGGCTGTAGTCTTCAACGGTAGCCTTCACCACGGAGCGGATTTACCTAGGGTTTTGGAAAGTACTACGGGTAGTTTAGGTACAGCAGGAAGTTTATCAACTTACTTACCTGATCAGAAAGTTGACGGTACGGTACGACAACAACCCAACTATGCTGTCCATAACAGACCTGCGGTTTTCTTCCGTAAATTCCTGACTGGAGATTCTAACTCTTACAGCTCTTTCACTATGAATCTCACTACAAATGGGGAACTCTCGTCACAATTATCCTCAGGTAAACTTAAAATTTATATCTGGAAACTTGGTAGTGTAGACCCAACATCTATAAACCTAAACCTTCCACCCAACTACTCTGCGGTTAATCCAAATACGAGCACGGTTAATAGTTTATGGGGGCATGCAGATTACAATTTTGTTGCTTTTGATGATGGTGTATCTCAAACCGCGGCAGGCAGTGGTTGTATATTTTCGCAGACAGGTAATATCCTGACACTAACTTTCGGAGGGTACTCTGTGGAAGATGGGGTATTGGTACGATTTGAACTGGAGAAGGGTGTTAGAATTGATGAAGTAGGAGTAAATTTTGTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ba22a67e7c41304d59de1f1976c2c4fa374b13ef207ad74e332eb3304d5d50da
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3194
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Independent host- and bacterium-based determinants protect a model symbiosis from phage predation Lynch,J.B., Bennett,B.D., Merrill,B.D., Ruby,E.G. and Hryckowian,A.J. — — GenBank