Protein

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Genbank accession
XCO12130.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSIYDTGTASLTENGQVTGAGTQWAMPLTLIRVGATIVFKTDPVQIYTITEIASDTSLSVYNPNGETAPAGTGYAILAHDGITVQGLAQGVAETLRYYQSRETEVADAVDAFNNFDANDFETKVSQVNSQHSDVVTIGSQVATDAAQVSSDKNAAAASAISASNDKDSAAASAQEAADYAASLDTQNLLRKDLALSDLTDKQLARQNLDVYSKSEQKFKTFNFVRDVLDSNVNDGDYIFIKNISSTNDSGGGIFSVEKSRDMTPDGGLVINVGESSQIFRDGFSGGIFKGPVDVRFFGAIPHNSSVDNSVAINLCLSSPYVNECYIGDYYYVKKPILMRSSKSIVGPLSSWAYSDSGLNMNGTIALAGDHSLGYLDPILDFRGCRQTAISNIDVDARGADVCCIEYGRRFSDNSNSESFNNHLRNNCTFRAARIGLRTDNAGLHRSYGDQITGCVEAGFYSSNNISDSTITSMYINDIGYHSGSDPASLSETVGVGIRLGPHSGVAFIGGKIEYTRIHVQCIGTSYSRFSNMWLDVAKRCAVVFIGDGEGSGTNNFIDNCIITGGGYTSSDGGAVTIDGTYGNIDLTITGGAIVASDEQINPNATTEPTYGAKLAGLKVGNNPDGLVVANGVDMRKCSSQFGIYAYGGSKVTDSSLSLKTNSLSGGATINGYSYDAGSEYRGLIIRDADSDSAAASVGVPVGGFYRNNGSNLNIRVS
Physico‐chemical
properties
protein length:717 AA
molecular weight: 75790,56640 Da
isoelectric point:4,68742
aromaticity:0,08368
hydropathy:-0,19372

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XCO12130.1
1 717
Domain Start End Length (AA) Confidence
N-terminal 1 308 308 0,9948
Central domain 309 669 362 0,9898
C-terminal 670 717 47 0,9186
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-308
Central
309-669
C-terminal
670-717

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage GaoY1-9D
[NCBI] 		3233534 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XCO12130.1 [NCBI]
Genbank nucleotide accession
PP971806.1 [NCBI]
CDS location
range 28228 -> 30381
strand -
CDS
ATGTCAATTTATGATACTGGCACAGCCAGCCTTACAGAAAACGGTCAAGTTACTGGCGCTGGAACTCAATGGGCTATGCCGCTGACGCTAATTCGAGTTGGTGCCACAATCGTATTTAAAACTGATCCGGTGCAGATTTACACTATCACTGAGATCGCTAGTGATACGTCTTTATCTGTATATAATCCAAATGGTGAAACAGCACCAGCAGGTACAGGTTACGCGATCCTTGCGCACGATGGGATTACAGTTCAGGGTTTGGCTCAGGGTGTTGCCGAGACTTTGCGTTACTATCAGTCACGCGAAACAGAGGTTGCCGATGCTGTTGATGCTTTCAACAACTTCGATGCAAATGACTTTGAAACAAAGGTTTCTCAGGTTAACTCGCAGCATAGTGATGTTGTTACTATTGGAAGCCAGGTTGCCACAGATGCTGCTCAAGTATCATCTGATAAGAATGCCGCAGCCGCAAGCGCAATCTCGGCAAGTAATGACAAAGATTCTGCCGCAGCATCTGCTCAGGAGGCAGCTGATTATGCCGCATCACTTGATACGCAAAACTTATTGAGAAAAGATTTGGCACTATCGGACTTAACAGATAAGCAACTTGCAAGGCAGAACCTTGATGTTTACTCAAAATCAGAGCAAAAATTCAAGACATTCAATTTTGTAAGAGATGTTCTTGATAGTAATGTAAATGATGGTGACTATATCTTTATTAAAAATATTTCTTCTACCAATGATAGCGGTGGTGGTATTTTTTCTGTTGAAAAATCAAGAGATATGACACCTGATGGCGGGTTGGTAATTAACGTTGGAGAATCTTCGCAGATTTTTAGGGATGGTTTTTCTGGTGGTATTTTTAAAGGACCTGTTGATGTTAGGTTTTTTGGTGCAATCCCACACAATTCAAGCGTTGATAACTCGGTAGCAATAAACCTGTGCCTTTCATCTCCATATGTAAATGAGTGCTACATTGGTGATTATTACTACGTTAAAAAACCAATTTTGATGCGTAGTAGCAAGTCAATTGTTGGGCCTTTATCCTCGTGGGCTTATTCTGATAGCGGTTTAAATATGAATGGAACCATAGCGCTCGCTGGTGATCACTCTCTTGGATATCTTGACCCGATTCTTGATTTTAGGGGTTGTAGGCAGACAGCTATATCAAATATTGACGTAGACGCAAGGGGTGCTGATGTTTGTTGTATTGAATACGGAAGGAGATTTAGCGACAACTCAAACTCCGAGTCATTCAATAACCATTTAAGGAATAACTGCACGTTTAGAGCCGCAAGGATTGGTTTGAGGACAGATAATGCAGGTCTACACAGGTCTTACGGAGATCAGATTACAGGGTGTGTTGAAGCGGGGTTCTATTCATCAAATAACATAAGCGATTCAACAATTACAAGCATGTACATTAATGATATTGGATACCACTCAGGAAGTGATCCTGCTTCATTGTCGGAAACTGTTGGTGTTGGTATAAGGTTGGGTCCGCATTCTGGTGTTGCCTTTATTGGTGGGAAGATAGAGTACACAAGGATACATGTTCAGTGCATCGGGACGTCGTACTCAAGATTCTCAAACATGTGGCTTGATGTTGCTAAAAGATGCGCTGTTGTTTTCATTGGGGATGGCGAAGGCTCTGGTACTAACAATTTCATAGATAACTGCATTATCACTGGAGGTGGATATACGTCAAGCGATGGCGGGGCTGTAACCATAGATGGAACTTATGGAAATATTGACTTAACAATCACGGGTGGGGCAATAGTTGCGTCTGATGAGCAAATTAACCCGAATGCAACAACAGAACCGACCTACGGAGCTAAGCTAGCCGGATTAAAAGTTGGGAACAACCCTGATGGGCTTGTTGTTGCTAACGGTGTTGACATGAGAAAGTGCAGCTCGCAATTTGGTATTTACGCTTACGGAGGTAGCAAGGTTACAGATAGTAGTCTATCACTTAAGACTAACTCATTATCTGGAGGGGCAACAATAAATGGATATTCATATGACGCTGGCTCTGAATATAGGGGGTTAATAATCAGGGATGCTGATAGCGATTCCGCCGCGGCGTCTGTCGGCGTTCCAGTTGGTGGATTCTACAGAAATAACGGAAGCAACCTTAACATTAGAGTTTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d47c359be87c14c61a8ca4195d78f31c5ad1dd1e022c8e2d84ea267724a76e33
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8066
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The complete genome sequence analysis of a novel Escherichia phage GaoY1-9D Zeng,X., Gao,R. and Fan,X. 2024 — GenBank