Protein

View in Explore

Genbank accession

BDD79457.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence Phold

Probability 1,00

Evidence RBPdetect

Probability 0,84

Evidence RBPdetect2

Probability 0,96

Protein sequence

MADSNVVGKTILQLDPLTGQIDLANSYIEVHVVGQTSSQKVPLSGVSVNGKSAYQVAQDAGFAGTQAQWLASLVGANGKSAYQSALDQGFVGTEAAWVASLKGATGAAGAAGATGAAGADGKTIIATSGAPANGTGNNGDLAFDAATSTIYGPKSAGAWPAGVVLKGAKGDTGNTGAAGTNGNTLLTTNGAPAAGTGQNGDYAYDPATSTMYGPKAGGAWPAGSVIKGAKGDTGAAGAAGPTGNSAYQDAVAQGYSGDLTSWLASLKGAKGDTGAAGPAGQSSVLGHLVGSVNTSADLPDVSGYEQADYFFVGTHVWMNLNGEWTDMGDFQGLPGKDGSGITVLGSLPSSDYLPVSGQRNGDAWLVGTVMYVWQGTTWQLQGQQGLQGPVGPTGATGPQGSSAWDVIRAQHPEVDTLAKFITYITGPQGAKGDTAISFVADGTVATTGDLPATGTNNHGYLVGNDTDGYDFHVWINSQFVNLGRNVGPKGDTGATGPQGEQGPAGNAMKPKGTVANVGALPSAGNSVGDSYGVQGHLYSWDGAAWVDMGNLTGPAGATGAQGPVGQPVNAKGSLANTGLLPSSGNANGDAYEIGGFIYVYNSSTAQFVNMGQWRGANGTNGTNGLSAYQQAQAAGFAGTVTEWLASLKGADGVSFTYIGQFANAAALPTGTHTGAAATTTDTNHIYLWDATNGWTDNGQIGVQGPQGLQGPTGADGKSAYQVAVDAGFAGTQAQWLASLKGLQGDSAYTVAVAQGFAGDVTAWLASLKGAKGDTGATGATGATGPTGNTGATGPAGTSLAYIGDFASSGAIPAGTLSQVATAAGHIFINNGTTWVDAGPVAQGPQGPKGDTGNTGATGATGQSAYQAAVAGGFVGTQAQWLASLVGPTGASAVQDAIAAGKLSPGATINDYITLTTGPQGPAGADGATGPQGPTGPAISIIGTLSDSSQLPGTGTAGTGYAIPDSSSPGTYNCWIWLSTTSQWFNLGHVVGAQGPQGIQGLRGLQGLTGPAGPTGPQGTLWIVLTRDPQAQDGNVGDYFFNSNTQEFFRKTSTSTWASLGHIGGGNLNAPAATGKYRGYNDSGWVDLPSVVNALPTDNTGKHYVLSNGLWVQDTLIDTIPADTGTYIMKSGAWTRLDTYTLKAVDAAISAGAVTLDLSVARTFRIQNTAAAAITMTNLPASDRTTTVIVKIYGKTNAMTWTNTIRWFDGSAPPLTNSTTTVVLNWDGTEWVGSVPN

Physico‐chemical properties

protein length:	1236 AA
molecular weight:	123457,83620 Da
isoelectric point:	4,65025
aromaticity:	0,08010
hydropathy:	-0,14345

Domains

Domains [InterPro]

DC_1725
STR
15–78

DC_1725 IPR050149

DC_2121
ATT
74–164

DC_2121 DC_1473 DC_1340 DC_1158 G3DSA:1.20.5.320

DC_1065
STR
334–437

DC_1065 DC_1340 DC_1473 DC_0449

BDD79457.1

1 1236

Architecture

STR

ATT

STR

RBD

STR 15-73 | ATT 74-164 | STR 165-1043 | RBD 1044-1236

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1725	STR	DC_1725	15	78	Novel HMM	DC_1725	Central	Low	Positional only	85 proteins / 85 hits
DC_2121	ATT	DC_2121	74	164	Novel HMM	DC_2121	N-terminal	Low	Positional only	48 proteins / 48 hits
IPR050149	Unmapped	-	96	1034	InterPro	Collagen superfamily	-	-	-	-
DC_1473	STR	DC_1473	165	363	Novel HMM	DC_1473	Central	Low	Positional only	59 proteins / 59 hits
DC_1065	STR	DC_1065	334	437	Novel HMM	DC_1065	Central	Low	Positional only	109 proteins / 109 hits
DC_1340	STR	DC_1340	410	503	Novel HMM	DC_1340	Central	Low	Positional only	192 proteins / 192 hits
DC_1340	STR	DC_1340	486	567	Novel HMM	DC_1340	Central	Low	Positional only	192 proteins / 192 hits
DC_1158	STR	DC_1158	546	845	Novel HMM	DC_1158	Central	Low	Positional only	8 proteins / 8 hits
DC_1473	STR	DC_1473	814	993	Novel HMM	DC_1473	Central	Low	Positional only	59 proteins / 59 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	991	1043	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
DC_0449	RBD	DC_0449	998	1236	Novel HMM	DC_0449	C-terminal	Low	Positional only	30 proteins / 30 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Burkholderia phage FLC8 [NCBI]	2906466	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Burkholderia glumae [NCBI]	337	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Genbank protein accession

BDD79457.1 [NCBI]

Genbank nucleotide accession

LC667450.1 [NCBI]

CDS location

range 156853 -> 160563
strand -

CDS

ATGGCGGATTCGAATGTGGTGGGTAAAACCATCCTCCAGCTCGACCCACTGACTGGCCAAATCGATCTCGCGAACTCGTATATCGAAGTTCACGTGGTTGGTCAAACGTCCAGCCAGAAGGTCCCGCTCTCCGGTGTTTCGGTGAACGGCAAGTCGGCCTATCAGGTCGCACAAGACGCAGGCTTTGCGGGAACGCAAGCTCAATGGCTGGCAAGCCTCGTTGGCGCAAACGGTAAGTCCGCTTACCAGTCGGCACTCGACCAGGGTTTCGTCGGTACGGAAGCAGCCTGGGTCGCATCGCTCAAAGGTGCAACGGGTGCTGCGGGAGCAGCAGGCGCGACAGGCGCCGCAGGTGCAGATGGCAAGACCATCATCGCTACCAGTGGTGCACCCGCAAACGGCACTGGCAACAACGGCGATCTGGCTTTCGATGCGGCTACCTCGACCATCTATGGTCCGAAGTCCGCAGGCGCATGGCCGGCAGGTGTGGTGCTCAAAGGCGCGAAAGGTGACACCGGCAATACCGGTGCTGCTGGCACGAACGGCAACACGCTTCTCACGACCAACGGCGCACCTGCTGCTGGTACGGGTCAGAATGGCGATTACGCCTACGATCCTGCAACGTCCACGATGTATGGTCCGAAGGCTGGTGGTGCATGGCCTGCTGGTTCCGTCATCAAGGGCGCAAAGGGTGATACGGGTGCCGCAGGCGCTGCTGGTCCGACGGGTAACTCCGCCTACCAGGATGCAGTCGCACAAGGTTATTCCGGTGACCTGACCAGCTGGCTTGCCAGCCTGAAGGGTGCCAAGGGCGATACCGGTGCAGCCGGTCCCGCAGGCCAAAGCTCAGTGCTCGGCCATCTCGTGGGTTCGGTGAATACGTCGGCAGATCTGCCGGATGTTTCGGGCTACGAACAAGCCGACTACTTCTTCGTCGGCACGCATGTCTGGATGAACCTGAACGGTGAATGGACCGACATGGGTGACTTCCAGGGCTTGCCTGGTAAAGACGGCTCGGGTATCACGGTGCTCGGCTCACTCCCCTCGTCGGACTACCTGCCGGTTTCCGGTCAGCGTAACGGCGATGCATGGCTGGTTGGTACGGTCATGTATGTGTGGCAGGGTACGACATGGCAGCTTCAAGGTCAACAAGGTCTGCAAGGCCCTGTTGGTCCGACCGGCGCAACGGGCCCGCAAGGCTCGTCCGCATGGGACGTCATTCGCGCTCAACACCCGGAAGTCGACACGCTCGCGAAGTTCATCACGTACATCACTGGTCCGCAAGGTGCCAAGGGCGATACGGCGATTTCGTTCGTGGCTGACGGTACGGTTGCAACGACTGGCGATCTGCCGGCAACGGGCACCAACAACCATGGTTATCTGGTCGGTAACGACACGGACGGCTATGACTTCCACGTCTGGATCAACTCGCAGTTCGTGAACCTCGGCCGCAACGTTGGTCCGAAGGGTGATACGGGTGCAACCGGTCCTCAAGGCGAGCAGGGTCCTGCCGGTAATGCGATGAAGCCGAAGGGCACTGTCGCAAACGTCGGTGCACTGCCTTCGGCTGGCAACAGCGTGGGCGATTCCTACGGCGTACAGGGTCACCTGTATTCGTGGGATGGTGCTGCCTGGGTCGACATGGGCAACCTGACGGGTCCTGCTGGCGCTACTGGCGCTCAAGGTCCGGTTGGTCAACCTGTCAACGCAAAGGGTTCGCTTGCGAATACCGGTCTGCTGCCGAGCTCGGGCAACGCCAATGGCGATGCTTACGAAATCGGTGGTTTCATCTACGTCTACAACTCGTCGACGGCTCAGTTCGTCAACATGGGTCAGTGGCGTGGTGCAAACGGTACGAACGGCACCAACGGTCTGTCGGCCTATCAGCAAGCGCAAGCTGCTGGTTTCGCTGGCACTGTGACGGAATGGCTGGCTTCGCTTAAGGGCGCAGATGGCGTGAGTTTCACGTACATCGGTCAGTTTGCGAATGCTGCTGCTCTGCCGACGGGAACGCACACGGGCGCTGCTGCTACCACGACCGATACCAACCACATCTACTTGTGGGATGCAACCAACGGCTGGACCGACAACGGTCAGATCGGTGTGCAAGGCCCGCAAGGCTTGCAGGGTCCGACTGGTGCCGATGGTAAGTCCGCTTACCAAGTCGCTGTGGATGCTGGCTTTGCCGGTACCCAGGCTCAGTGGCTCGCGTCGCTGAAGGGTCTGCAAGGCGACAGCGCCTATACGGTTGCTGTGGCTCAAGGCTTCGCTGGCGATGTCACGGCATGGCTCGCATCCCTCAAGGGTGCGAAGGGCGATACTGGTGCTACGGGTGCTACCGGGGCAACTGGTCCGACCGGTAACACGGGTGCAACGGGTCCTGCTGGTACGAGTCTCGCCTACATCGGCGACTTCGCAAGCTCCGGTGCGATCCCTGCTGGTACGCTTTCCCAAGTGGCGACCGCTGCTGGTCACATCTTCATCAACAATGGTACCACCTGGGTCGATGCAGGTCCGGTGGCCCAAGGTCCACAGGGTCCCAAAGGTGACACAGGTAACACTGGCGCAACTGGCGCAACTGGCCAGAGCGCCTACCAAGCAGCCGTCGCTGGCGGATTTGTGGGTACGCAAGCCCAGTGGCTCGCCTCGCTTGTCGGTCCTACCGGCGCTTCTGCGGTCCAGGACGCCATCGCAGCCGGAAAGCTCTCCCCCGGCGCAACCATCAACGACTACATCACCCTGACCACGGGTCCGCAAGGTCCTGCAGGCGCAGATGGTGCGACTGGCCCTCAAGGCCCGACGGGTCCGGCGATTTCGATCATCGGCACGTTGAGCGATTCCAGCCAACTCCCGGGTACGGGTACCGCTGGTACGGGCTATGCGATTCCGGATTCGTCCTCGCCTGGCACTTACAACTGCTGGATCTGGTTGTCGACCACTTCGCAGTGGTTCAACCTCGGTCACGTGGTTGGTGCTCAAGGTCCGCAGGGTATCCAGGGTCTGCGTGGTCTGCAAGGTCTCACGGGTCCTGCAGGTCCGACTGGTCCGCAAGGTACGCTCTGGATTGTGCTCACGCGCGATCCGCAAGCGCAAGACGGTAACGTCGGCGACTACTTCTTTAACAGCAACACGCAGGAATTCTTCCGCAAGACCTCGACGTCCACCTGGGCATCGCTGGGTCACATCGGCGGGGGTAACCTGAACGCTCCGGCAGCAACGGGTAAATACCGTGGCTACAACGACTCGGGCTGGGTGGACCTGCCTTCGGTCGTGAACGCCTTGCCGACGGATAACACGGGTAAGCATTACGTGTTGTCCAACGGTCTGTGGGTGCAAGATACCCTGATTGATACGATCCCGGCAGATACGGGCACGTACATCATGAAGAGCGGTGCCTGGACTCGTCTGGATACCTACACTCTGAAGGCTGTCGATGCTGCGATCTCCGCTGGTGCGGTTACGCTTGACCTCTCGGTTGCGCGTACCTTCCGTATCCAGAATACGGCTGCTGCTGCGATCACGATGACGAACCTCCCGGCATCGGACCGCACGACTACCGTGATCGTGAAGATCTACGGCAAGACGAACGCCATGACCTGGACCAACACCATCCGTTGGTTCGACGGCTCGGCGCCTCCGCTGACCAACAGCACGACCACCGTTGTCCTGAACTGGGACGGTACGGAATGGGTCGGCTCGGTTCCGAACTAA

Genome Context

Tertiary structure

PDB ID

68e81b94a615341fc7410ad6d5bffbf3fdf8b07f3f8736528d0d69ec8376d162

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,6599

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Optimal preservation method of new biocontrol agent Burkholderia jumbophages having a potential suppressing rice seedling rot disease	Kanaizuka,A., Sasaki,R., Miyashita,S., Ando,S. and Takahashi,H.	2022-11-19	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature