Protein

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Genbank accession
WAX24263.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 0,51
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,50
TF
Evidence RBPdetect2
Probability 0,66
Protein sequence
MKLQRLLGAIGAVVMSVSTALAAEQSSYVTPGAGPMSMATFVTNHLNPALRAIAACHNGSSAPANGPGTAPLAFQFWCDTTANPAIVKMYDGASWVAIGALNTTTHAWSPYLTGGTSGGVPYFASAGVMASSAALAQYGFLIGGGAGAAPASIAACSDDQIAFGRSSNSPLCRTVTGDVTFAGGAAAIGANKVANSMLRQSGALAVVGRSANSTGNVADIQATASSDGVLRESGGSIGFGTVATGGIADSAVTNAKLATMAANTTKCNATAGSAAPTDCNASTMRANIGAVIGTNVEAWDADLDCLAALSTGGIIGRTGAGTCATRTITAPAAGITINNGDGVSGNPTLSLANDLAALEGLSSTGIARRTGADAWSVGGVVTVAEGGTNCTSASGTCLDNITGFAATGLIARTAAGTYAARTVTGTTNEVCVTNGDGVSGNPTLGVCAGWLSTAHTWSATQTFAAPIVTGLADFQGARKDSTQSTPAQITADQNNYNPSSVVCATSSTLIINSDAARNITGIAGGVAGCDLFLFNNGSFTITLKDGSASSSAANRFAFGADFALGSKAAAHLKYDGNGSVWRNATGSGSGGGGSGTVTQVVCGTGLTGGTITTSGTCAVDSSPYIGMVDWVAYTRVPVNYLKADGTAVSRTTYSALFAKLVYSSTVTIAIASPAVVSWTAHGLSVCDPVKFYTSGALPTGITAGTAGTGGTVYYVSTVVNANSFQISTTCGGSAVNTSGSQSGTHTAVNAPWGDGDNSTTFNLPELRGEFVRNWDNGRGVDSNRGFGLDQLDAMQGHIHTPSWGGNRMYTPDTNNGTAAGNGAASWGAITATIGAPATDGTNGTPRTAAETRPRNNTLMAIIRYQ
Physico‐chemical
properties
protein length:865 AA
molecular weight: 85875,16340 Da
isoelectric point:5,99210
aromaticity:0,06358
hydropathy:0,10497

Domains

Domains [InterPro]
DC_2113
RBD
445–588
DC_2113 IPR037053
SSF88874
STR
619–864
SSF88874
WAX24263.1
1 865
Architecture
RBD
ATT
STR
RBD 445-588 | ATT 614-664 | STR 665-864 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WAX24263.1
1 865
Domain Start End Length (AA) Confidence
N-terminal 1 343 343 0,1110
Central domain 344 542 200 0,1576
C-terminal 543 865 322 0,9246
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-343
Central
344-542
C-terminal
543-865

Taxonomy

  Name Taxonomy ID Lineage
Phage Bradyrhizobium phage ppBdUSDA122-1
[NCBI] 		3003362 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Bradyrhizobium diazoefficiens
[NCBI] 		1355477 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WAX24263.1 [NCBI]
Genbank nucleotide accession
OP596612.1 [NCBI]
CDS location
range 5285 -> 7882
strand -
CDS
ATGAAACTGCAACGCCTTCTCGGCGCGATCGGCGCTGTCGTCATGTCCGTCTCGACTGCGCTGGCGGCCGAGCAATCCAGCTATGTCACGCCTGGGGCCGGTCCGATGTCGATGGCGACGTTCGTGACCAATCACCTCAACCCGGCGCTGCGCGCGATCGCGGCCTGCCACAACGGATCCTCGGCGCCGGCGAACGGGCCGGGCACCGCGCCACTGGCATTTCAATTCTGGTGCGACACGACGGCCAATCCGGCGATCGTGAAGATGTACGACGGTGCGTCCTGGGTCGCGATCGGCGCGCTCAACACCACGACGCACGCCTGGTCGCCCTATCTGACCGGCGGCACCTCCGGCGGCGTGCCGTATTTCGCCAGCGCCGGCGTGATGGCGAGCTCGGCGGCGCTGGCACAATACGGTTTCCTGATTGGCGGGGGCGCCGGCGCCGCGCCAGCCTCGATCGCGGCGTGCTCGGATGACCAAATCGCCTTCGGTCGCAGCTCCAACAGTCCGCTTTGCCGGACCGTGACCGGAGATGTCACCTTTGCCGGCGGCGCGGCGGCCATCGGTGCGAACAAGGTCGCCAATTCCATGCTTCGTCAGTCGGGCGCTTTGGCGGTGGTCGGTCGCTCGGCAAATTCGACGGGCAACGTCGCCGATATCCAGGCGACCGCGTCGAGCGATGGTGTGTTGCGCGAGAGTGGCGGATCCATCGGCTTTGGCACGGTTGCGACCGGCGGCATCGCCGATAGTGCGGTGACCAATGCCAAGCTCGCGACGATGGCTGCGAACACGACAAAGTGTAACGCGACGGCCGGATCTGCGGCGCCGACCGACTGCAACGCTTCGACGATGCGAGCCAATATCGGCGCTGTGATCGGGACCAATGTCGAGGCCTGGGACGCTGACCTAGATTGTCTAGCCGCCCTGTCGACTGGCGGCATTATCGGCCGCACCGGCGCCGGCACCTGTGCGACGCGCACCATCACGGCGCCGGCGGCCGGGATCACCATCAACAATGGCGATGGCGTCTCCGGCAATCCGACGCTGTCGCTGGCAAATGACCTGGCGGCGCTCGAGGGGCTTTCCTCGACGGGTATCGCGCGCCGAACGGGGGCCGATGCCTGGTCCGTTGGCGGCGTCGTGACGGTGGCCGAGGGCGGCACGAACTGCACGTCGGCGTCCGGCACCTGCCTCGATAACATCACGGGCTTTGCCGCGACGGGCCTTATCGCTCGGACCGCCGCCGGAACCTATGCGGCGCGCACCGTCACCGGAACCACAAACGAGGTCTGCGTTACCAATGGCGACGGCGTCTCCGGAAATCCGACGCTCGGCGTCTGTGCCGGCTGGCTGTCGACTGCGCACACATGGTCCGCGACGCAGACCTTTGCCGCGCCGATCGTCACGGGGCTTGCTGACTTCCAGGGCGCGCGCAAGGATTCGACGCAGTCGACGCCGGCGCAGATCACGGCCGATCAGAACAACTACAATCCGTCGTCGGTGGTCTGCGCGACGTCGTCGACTCTGATCATCAATTCGGATGCGGCGCGCAACATCACTGGTATCGCCGGCGGCGTCGCCGGCTGCGACCTGTTTCTGTTCAACAACGGGTCGTTCACGATCACGCTTAAGGACGGCAGCGCATCCTCGAGCGCGGCAAACCGCTTTGCCTTCGGCGCTGACTTTGCGCTGGGGTCGAAAGCCGCCGCGCATCTGAAGTACGATGGCAACGGCTCGGTGTGGCGCAATGCGACCGGCTCGGGATCTGGTGGCGGCGGCTCCGGCACGGTGACGCAAGTGGTCTGCGGCACGGGTCTGACCGGCGGTACGATCACGACCAGCGGCACCTGCGCCGTCGATTCATCGCCTTACATCGGCATGGTCGATTGGGTCGCTTATACGCGTGTCCCGGTCAATTATCTCAAGGCCGATGGCACGGCGGTTTCGCGCACCACCTATTCGGCGCTGTTCGCCAAGCTGGTCTATTCGTCGACGGTGACGATCGCGATCGCCTCGCCCGCGGTCGTTAGCTGGACGGCGCACGGCCTGTCGGTCTGCGATCCCGTCAAGTTCTATACCAGCGGCGCGCTTCCAACCGGCATCACGGCCGGCACGGCCGGCACGGGCGGAACGGTCTATTACGTCAGCACTGTGGTTAACGCTAACTCGTTCCAGATTTCGACGACGTGCGGCGGCTCGGCGGTCAACACGTCGGGTTCACAATCGGGCACGCATACGGCCGTAAATGCGCCGTGGGGGGACGGCGACAATTCCACGACGTTCAACCTGCCGGAACTGCGCGGCGAGTTCGTCCGCAATTGGGACAACGGGCGGGGCGTCGATAGCAACCGCGGCTTTGGTCTCGATCAGCTCGACGCGATGCAGGGCCATATCCATACGCCGTCATGGGGCGGAAATCGCATGTATACGCCTGACACGAACAACGGCACGGCAGCCGGCAACGGTGCGGCGAGCTGGGGCGCGATCACTGCGACGATCGGCGCGCCGGCTACGGATGGCACCAATGGCACGCCGCGCACCGCGGCTGAGACCAGGCCGCGCAACAATACGTTGATGGCGATTATTCGCTATCAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5f1109bf621930211cbecd8430f25dd9489b64d69cbef01212e67007662eb72c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7033
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Spontaneously produced lysogenic phages are an important component of the soybean Bradyrhizobium mobilome Joglekar,P., Ferrell,B.D., Jarvis,T., Haramoto,K., Place,N., Dums,J.T., Polson,S.W., Wommack,K.E. and Fuhrmann,J.J. 2023 37017542 GenBank