Protein

View in Explore
UniProt accession
A0A8S5SX56 [UniProt]
Protein name
Collagen triple helix repeat protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,91
Protein sequence
MTEYVFTLSDKTPTVEIDVKETAIAQGAGQDLYDRAKRKLGFTGTFEEFLTKFKGERGEKGEDGAAGAKGDTGERGIQGERGTDGLPGAKGDKGDKGDTGADGLPGAKGDTGDKGADGLPGAKGERGADGAVGAKGEKGDTGERGPQGQRGETGQQGLQGIQGPIGLTGPKGDTGPKGADGQKGERGEQGPIGPVGPQGPIGLTGPKGADGRDGVGIPQELTLSGNTLTLSNGGGSVTLPSQAATNTPTGQANEYEIHGTGMPNGKVAAPVGTTYVDTVATNGALKWIKRTGTDNQGWEVLTGDTGWRTIDIRSKLGASYLKVRRKNDTVMYQFGGLSWGWFGIVRRNGPGYSVQPSDRERNVFILGLQQIPRGFQSEFSLIGSIYNDKGTPYGTWYLGGSGDSNMLRFQFTDPVPTDRDIGDIRVSPIMYLTNDPWPTRLP
Physico‐chemical
properties
protein length:442 AA
molecular weight: 46139,40370 Da
isoelectric point:5,45264
aromaticity:0,06787
hydropathy:-0,70928

Domains

Domains [InterPro]
DC_1453
STR
4–110
DC_1453 IPR008160
IPR050149
Unmapped
54–215
IPR050149
IPR008160
STR
58–113
IPR008160 DC_0554
DC_0620
STR
87–169
DC_0620
A0A8S5SX56
1 442
Architecture
STR
STR 4-442
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Myoviridae sp. ctLYp5
[NCBI] 		2827680 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAF55480.1 [NCBI]
Genbank nucleotide accession
BK032693 [NCBI]
CDS location
range 7815 -> 9143
strand -
CDS
ATGACGGAATATGTATTTACTCTTAGCGACAAAACGCCGACCGTTGAGATTGACGTTAAGGAAACCGCCATTGCTCAAGGTGCAGGTCAGGATTTGTACGACCGCGCCAAAAGGAAGCTTGGCTTTACCGGCACTTTTGAAGAGTTTCTCACTAAGTTTAAAGGCGAGCGAGGAGAGAAAGGCGAAGATGGCGCGGCTGGTGCGAAAGGCGACACTGGCGAACGAGGGATTCAAGGCGAAAGAGGAACGGACGGCTTGCCAGGCGCAAAAGGCGACAAGGGCGACAAGGGCGACACTGGAGCGGATGGCTTGCCCGGTGCGAAAGGAGACACTGGCGATAAAGGCGCTGATGGTCTGCCTGGGGCAAAAGGCGAACGAGGCGCAGACGGTGCAGTTGGCGCAAAGGGTGAGAAAGGCGATACAGGCGAGCGTGGCCCACAAGGACAACGTGGGGAAACGGGTCAGCAAGGTTTGCAAGGTATCCAAGGACCTATTGGCCTTACTGGACCTAAAGGTGATACTGGACCTAAAGGTGCAGACGGACAAAAGGGCGAGCGAGGGGAACAAGGCCCAATCGGACCTGTTGGGCCTCAAGGGCCTATTGGGCTGACTGGTCCAAAAGGAGCAGATGGCCGCGACGGTGTAGGTATCCCGCAAGAATTGACCTTATCCGGAAACACGCTCACTCTATCAAACGGCGGTGGAAGTGTAACGCTACCAAGTCAAGCAGCTACAAACACGCCAACCGGGCAAGCCAATGAGTATGAAATTCACGGTACTGGTATGCCTAATGGTAAGGTTGCCGCACCAGTCGGTACGACATACGTTGATACGGTTGCAACTAATGGCGCTTTGAAATGGATAAAGCGAACCGGAACAGATAATCAAGGCTGGGAAGTATTGACTGGGGATACTGGCTGGCGAACTATTGATATCCGTTCAAAATTGGGCGCGTCATATCTAAAAGTTAGACGCAAAAACGATACTGTTATGTATCAATTCGGTGGTTTAAGCTGGGGTTGGTTCGGTATCGTGCGCCGTAATGGCCCGGGGTATTCTGTTCAGCCATCTGACAGGGAGCGTAACGTTTTTATTTTAGGTTTACAACAAATACCGCGAGGGTTTCAGTCAGAATTTAGCTTGATTGGCAGCATTTACAACGACAAGGGTACACCATACGGAACATGGTATTTAGGTGGCTCCGGCGATAGTAACATGCTGCGTTTTCAATTTACCGACCCCGTCCCTACTGACCGAGACATTGGGGATATTCGGGTAAGTCCTATCATGTACCTGACTAACGACCCTTGGCCTACTAGATTGCCATAA

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0031012 extracellular matrix Cellular Component IEA:TreeGrafter (UniProt)
GO:0005615 extracellular space Cellular Component IEA:TreeGrafter (UniProt)

Tertiary structure

PDB ID
a5b2c3508c8dbe6f37b0ad19f3214abda118090bb74eed5b5b06cd497dbba58c
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6778
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50