Protein

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Genbank accession
YP_010106515.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence RBPdetect
Probability 0,85
Protein sequence
MANREMNFDLSKQPRLTPIIYGRVGDGSVQKVTVYLTLNDEPIDLTGYIITFEGMTNGNATVVMDTEGVVNRDDKNGKFDYIFPNMAFGVPGDYERAYFSITETESRQRSTTSNFQISVLEVADITAKEAETIITEYNKLIDKLNDAYKKALNDYDELSKQHIDELAKKIDGEALRVDTLNGRLDTIQSTISDFEKRMAALENNGAAMKDEVMLIKGQISSEDWNTIKESGFYQVNKATGANRPMADYSSGTLEVFNQTSLIIQRFTHSSGQIYTRSFYGNQWTAWKIQSPDLSNYPTRDEVTAEILPVKNELQTHKNDKNNPHGVTAAQVGAIPTTSAIKQTVTTPINFTNNIYHNDKLLLDETDNVIYRYRRSSLDNSWWEQKAKDAVNNTESKVELWRKGNLVIANWRVNVKDNTKFETSMPQIYRFPVGYRPFIDMGGTIYNAPLNIYQYSFNQTSLIQYAGIIELSGNDIRFASNKNGNHYVQGSFITRDPFPAAGSLEGGTVIITPRNADGSMDQQS
Physico‐chemical
properties
protein length:523 AA
molecular weight: 58990,09090 Da
isoelectric point:5,20386
aromaticity:0,09751
hydropathy:-0,56272

Domains

Domains [InterPro]
G3DSA:2.60.40.3350
ATT
1–124
G3DSA:2.60.40.3350 Coil Coil cd19958
DC_1249
STR
1–484
DC_1249
IPR018913
ATT
4–145
IPR018913
YP_010106515.1
1 523
Architecture
ATT
STR
ATT 1-145 | STR 146-484 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Enterococcus phage vipetofem
[NCBI] 		2719594 Uroviricota > Caudoviricetes > Andrewesvirinae > Vipetofemvirus vipetofem >
Host Enterococcus faecalis
[NCBI] 		1351 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010106515.1 [NCBI]
Genbank nucleotide accession
NC_055834 [NCBI]
CDS location
range 21310 -> 22881
strand +
CDS
ATGGCAAATAGAGAAATGAATTTTGATTTATCTAAACAGCCAAGATTAACGCCTATCATTTATGGTAGAGTTGGAGACGGTAGCGTACAAAAAGTTACCGTCTACCTCACTTTAAATGATGAGCCAATTGATTTAACTGGATATATAATTACATTTGAAGGAATGACAAACGGTAACGCAACAGTAGTTATGGACACTGAAGGTGTAGTAAACCGAGATGATAAAAATGGTAAATTTGATTATATTTTTCCAAATATGGCTTTTGGAGTTCCTGGAGATTATGAAAGAGCTTATTTTTCAATCACAGAAACTGAATCAAGACAAAGAAGTACGACTTCAAATTTCCAAATTTCTGTCTTAGAAGTTGCAGATATAACTGCAAAAGAAGCAGAAACAATTATAACAGAATACAATAAATTGATTGATAAATTAAATGATGCTTACAAAAAAGCATTAAATGATTATGACGAATTAAGTAAACAACATATCGATGAATTAGCGAAAAAGATTGACGGTGAAGCACTTAGAGTTGATACTTTAAATGGAAGATTAGACACAATCCAAAGCACGATTAGTGATTTTGAAAAAAGAATGGCAGCACTAGAAAATAATGGCGCCGCAATGAAAGATGAAGTAATGTTGATTAAAGGTCAAATCTCAAGTGAAGACTGGAATACCATTAAAGAGTCTGGTTTTTATCAAGTGAATAAAGCAACAGGCGCAAATCGTCCTATGGCAGATTATTCATCTGGTACTTTAGAGGTATTTAATCAAACTTCATTAATTATCCAACGTTTCACTCATAGTTCCGGGCAAATTTATACTCGTTCATTTTATGGTAATCAATGGACTGCATGGAAAATTCAGTCACCCGATTTATCAAATTATCCGACAAGAGATGAAGTTACTGCTGAAATTTTACCAGTAAAAAATGAGTTACAAACACATAAAAATGATAAAAATAATCCGCATGGTGTTACTGCAGCTCAAGTGGGCGCTATCCCTACTACTAGCGCAATAAAACAAACTGTCACAACACCAATAAATTTTACTAATAATATTTACCATAATGATAAATTATTATTAGATGAGACAGACAATGTTATTTATAGGTACCGTCGATCATCGTTAGATAATTCATGGTGGGAACAAAAAGCTAAAGACGCTGTTAATAACACAGAAAGTAAAGTTGAGTTGTGGCGAAAAGGAAATTTAGTTATTGCCAACTGGCGGGTTAACGTAAAAGATAATACTAAATTTGAGACTAGCATGCCACAGATTTATAGGTTCCCAGTTGGGTATCGCCCTTTTATAGATATGGGCGGAACAATCTATAATGCACCATTAAATATTTATCAATATTCATTCAACCAAACATCATTAATTCAGTATGCTGGAATTATTGAGTTGTCTGGAAATGATATCCGTTTTGCAAGTAATAAAAATGGAAACCATTATGTACAAGGCTCATTTATTACTAGAGACCCATTCCCAGCAGCAGGTTCTTTAGAAGGTGGGACGGTTATTATTACGCCTAGAAATGCAGATGGTTCGATGGACCAACAATCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
12f872531fae961fa3bbf5ed7e4f517d49b7abac6831bbc441c831a378ad4517
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7899
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A New High-Throughput Screening Method for Phages: Enabling Crude Isolation and Fast Identification of Diverse Phages with Therapeutic Potential Olsen,N.S., Hendriksen,N.B., Hansen,L.H. and Kot,W. 2020 — GenBank