Protein

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Genbank accession
YAA53153.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSVTVRGPNKFPAIDAPTGYAEKGESRFGYNTAGGVNVLGPNNSVDTSSYNTGAFNEVSGQFPSYDSAGNPTGSYQSSWGTFLGGYIGSWSCGVKIQRACKNITVERCKISGFNYAGVGIGIRNIASPDMADYPNESDVPEGIIISKNTITNCYSNGIGVLCGYKMGYFDNVISNIGHPNGADDLNASFDPGYGIGHGRNRRIRNITASRNFVFNCRRKCIDFHGGGQLIITDNFCLEHGVVGIYAKCGSGWHPNYEPYNLIISNNYVRSRDIPDSTSTGPLAGGRYTRSIDVGGGGEATAATYPNPFVKIHNNYCELRAFDGVAISTGGGDSAYQVYQDIDVSHNTVVLKCLTASNKAEGVMINAGTNATEVYRGQTVKLVGNSIKQLNTLNLNYRSPGYRIGGIPKSLIAHANTLDMNVQLQASMLCDFVLNDQTNFSFQGNQVLSTGQRSTCTLQECMFYENTKIFRAAGSGSLSIPGTLGRGVWQLVIAGTGNAFGSKQTQFASTGSGGTGADIVRNPTTGFIADFAIGVSGLTVPEVTQDSTVQIQLKQLMQLDFVF
Physico‐chemical
properties
protein length:562 AA
molecular weight: 60004,35280 Da
isoelectric point:7,46980
aromaticity:0,09609
hydropathy:-0,21050

Domains

Domains [InterPro]
IPR012334
STR
29–270
IPR012334 DC_0622
IPR011050
STR
91–271
IPR011050 IPR006626 IPR006626
IPR011050
STR
91–270
IPR011050
IPR006626
Unmapped
100–121
IPR006626 IPR006626 IPR006626
YAA53153.1
1 562
Architecture
STR
RBD
STR 29-271 | RBD 272-562
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YAA53153.1
1 562
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0173
Central domain 11 446 437 0,9926
C-terminal 447 562 115 0,9594
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-446
C-terminal
447-562

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage G13
[NCBI] 		3446677 Viruses >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAA53153.1 [NCBI]
Genbank nucleotide accession
PV805633.1 [NCBI]
CDS location
range 59855 -> 61543
strand -
CDS
GTGTCTGTAACAGTGCGTGGCCCTAACAAGTTCCCTGCTATAGATGCGCCTACTGGTTATGCAGAGAAAGGAGAATCTCGATTTGGCTACAATACAGCCGGTGGAGTTAATGTGTTGGGACCAAATAACTCAGTTGATACCTCTAGTTATAACACAGGGGCATTTAATGAGGTGTCCGGACAATTCCCATCCTATGACAGTGCGGGTAATCCAACAGGAAGCTACCAAAGCAGTTGGGGTACTTTTCTTGGCGGGTATATTGGCAGCTGGAGTTGCGGTGTTAAGATTCAAAGAGCTTGTAAAAATATAACCGTTGAAAGGTGTAAGATATCTGGCTTTAACTATGCAGGTGTTGGGATTGGCATAAGAAATATTGCCTCACCGGACATGGCGGACTACCCAAATGAAAGCGATGTTCCAGAAGGTATTATTATTTCAAAGAACACAATAACCAACTGTTACTCAAACGGTATAGGTGTTCTGTGTGGCTACAAAATGGGCTACTTTGATAATGTAATTAGCAACATCGGACACCCGAACGGTGCTGATGATTTGAATGCATCCTTTGACCCTGGCTATGGCATCGGACATGGTAGAAACAGGAGAATACGCAACATAACAGCCAGCCGCAATTTCGTTTTTAACTGCCGTAGAAAATGCATCGATTTTCACGGTGGGGGTCAGTTAATTATCACTGATAACTTCTGCCTGGAGCATGGCGTAGTCGGTATCTACGCTAAATGTGGTTCAGGCTGGCACCCAAACTATGAACCATATAACCTCATAATCTCTAACAACTATGTGCGCTCCAGGGATATTCCGGATAGTACCAGTACCGGTCCGCTTGCGGGCGGCAGGTACACCCGCAGCATCGATGTAGGTGGGGGTGGGGAGGCTACGGCAGCGACGTATCCGAACCCCTTTGTTAAGATTCACAACAACTATTGCGAGCTTAGAGCTTTTGATGGGGTAGCTATATCAACTGGAGGTGGCGATAGCGCATACCAGGTGTACCAGGATATTGACGTAAGTCATAATACTGTAGTGCTTAAGTGCTTAACCGCCAGCAATAAAGCAGAAGGTGTCATGATTAACGCCGGCACCAACGCAACTGAAGTATATCGTGGGCAAACCGTTAAGCTGGTGGGTAACAGTATTAAGCAACTGAACACGCTGAACCTGAACTACCGCTCCCCCGGTTATCGTATTGGAGGCATTCCTAAGTCCCTGATTGCACATGCCAACACTCTGGATATGAACGTGCAGTTGCAAGCATCCATGCTCTGCGACTTCGTTCTGAATGACCAGACTAACTTTAGCTTCCAGGGTAATCAGGTACTGAGTACCGGGCAGAGAAGTACCTGCACGTTGCAAGAGTGTATGTTCTATGAGAATACCAAGATATTCCGTGCTGCTGGTTCAGGTAGCTTGAGTATTCCAGGTACGCTCGGCAGGGGTGTATGGCAACTAGTTATTGCAGGTACAGGTAATGCTTTTGGTTCTAAGCAGACTCAGTTTGCAAGTACAGGTTCTGGGGGTACTGGGGCGGATATAGTAAGGAATCCTACTACCGGGTTCATTGCGGACTTTGCAATCGGTGTTTCTGGCTTAACTGTTCCGGAAGTAACCCAGGATAGTACCGTGCAGATTCAGTTGAAGCAGCTTATGCAACTGGATTTTGTGTTCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
f0c6525c2767f0810b470df6a66f206b813a9ce8cdf8373d0b6091c4fe3d697e
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8013
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50