Protein

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Genbank accession
YP_008857065.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,88
Protein sequence
MADYSQLPIENIWSTGGDMVAPTPAQQQGGWGIQSVPRQWWNWKWNLHDTNLAYLLQKGIPEWTSTQEYIANKSFCTRGGFVYKAVRTHTGSDPAQVSANWVRAFADFTTSSSALGSLTPREGGIPFFISATGASVFDSTAYGRGMLNVANAAGARNYISAQESSVVLSNLSTVTRAANTVPYFNTDTSMATFNITAFGRGLVNAANAENARGFLGLANSAIITADPANRAHTLVYRDAAGNFNAGVITATLSGNATTANKLRAPVTINGVAFDGSQNIVLPGLDTSYAGTVARLHINGANLSSADKTTQLALRNKSDTDWISLAVVDDNILQFVFRSATNPVVQIGNEVILHTGNQFSLGPTLTDARSRLGLDRLTQGSSDTQVFPSTLNNGPYLTVQPTAIGGFNGSTNGWLFRFDANGNMTHGTVPAARITGLSNSAQIPATTTAQANSLVQRDADGGFSAIAINAYGTIVGCGSNIFSRASGTGNAHIGFQRANGTELGLIWGAQSNNSMNFRVAGGSTAVSITGLDMTVTGRVNATTLNASGNVNATGNVNAGSATLNTAGNITGAAYGAYGSLTNWVDSVYAKKGEIPNDIARAGAAWDAVGQYILAGDQSGGSGGPGTIRAGNQLRPYSTISYTAGSLPAGSYRCMGAFAAGGNQITLWQRIS
Physico‐chemical
properties
protein length:670 AA
molecular weight: 69750,45180 Da
isoelectric point:8,84527
aromaticity:0,08507
hydropathy:-0,10060

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008857065.1
1 670
Domain Start End Length (AA) Confidence
N-terminal 1 313 313 0,6006
Central domain 314 512 200 0,2565
C-terminal 513 670 157 0,8651
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-313
Central
314-512
C-terminal
513-670

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PAK_P2
[NCBI] 		1348912 Uroviricota > Caudoviricetes > Vandenendeviridae > Pakpunavirus > Pakpunavirus PAKP2
Host Pseudomonas aeruginosa PAK
[NCBI] 		1009714 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008857065.1 [NCBI]
Genbank nucleotide accession
NC_022967.1 [NCBI]
CDS location
range 19097 -> 21109
strand +
CDS
ATGGCTGATTACAGTCAACTACCTATTGAAAATATTTGGTCCACAGGCGGGGATATGGTAGCCCCGACCCCTGCGCAGCAGCAAGGCGGATGGGGTATTCAGTCGGTTCCTCGCCAATGGTGGAACTGGAAATGGAACCTTCACGATACCAACCTAGCGTATCTGCTACAGAAGGGCATTCCAGAGTGGACCAGCACTCAAGAGTATATTGCAAACAAATCGTTCTGCACAAGGGGTGGTTTCGTCTACAAGGCTGTCCGCACCCATACAGGAAGTGACCCTGCACAAGTTAGTGCCAACTGGGTTCGAGCTTTCGCAGACTTTACCACATCTAGCTCTGCACTTGGAAGCCTGACACCAAGAGAAGGTGGAATCCCATTCTTCATTAGTGCTACAGGAGCTAGCGTGTTTGACTCTACGGCTTATGGCCGTGGCATGCTTAACGTGGCTAACGCAGCCGGAGCAAGAAACTATATTTCGGCTCAAGAAAGTTCTGTTGTACTGTCTAACCTGTCCACTGTGACTAGGGCTGCCAACACAGTTCCGTACTTCAATACGGATACCTCCATGGCTACCTTCAACATCACAGCGTTCGGAAGAGGACTTGTCAACGCGGCTAATGCTGAAAACGCAAGAGGTTTCCTAGGCCTAGCTAACTCTGCTATCATCACAGCCGATCCAGCTAACAGAGCCCACACTCTGGTCTATAGAGACGCTGCTGGTAACTTCAACGCTGGTGTGATTACGGCCACCCTGTCTGGAAACGCAACCACAGCTAACAAGCTAAGGGCTCCAGTTACAATCAACGGTGTAGCATTCGACGGAAGCCAGAACATTGTTCTTCCGGGCCTAGATACAAGTTATGCTGGAACGGTTGCACGCCTCCACATCAACGGAGCAAACCTTTCGAGTGCAGACAAGACGACTCAGCTAGCATTGAGGAATAAGTCTGACACTGACTGGATTAGCCTCGCTGTAGTAGATGACAACATTCTGCAATTCGTGTTCAGAAGCGCTACAAACCCAGTTGTCCAGATTGGTAACGAAGTTATCCTTCACACAGGAAACCAGTTCTCTCTGGGCCCTACTCTTACAGACGCTAGGTCTCGTCTGGGTCTCGACAGACTCACTCAAGGTAGCTCTGATACTCAAGTCTTCCCCAGCACCTTGAACAATGGCCCCTACTTGACCGTACAACCTACGGCTATCGGAGGATTCAACGGTAGCACTAACGGATGGCTGTTCCGATTCGACGCTAATGGTAACATGACTCATGGTACAGTTCCTGCCGCTAGAATCACTGGTCTGTCCAACTCGGCTCAGATTCCAGCCACAACTACGGCGCAGGCTAACTCTCTTGTTCAGAGAGACGCAGACGGAGGATTCAGCGCTATTGCGATTAATGCGTATGGCACTATCGTCGGGTGCGGCTCTAACATCTTCAGTAGAGCATCGGGCACTGGCAACGCCCACATCGGGTTCCAGAGAGCGAACGGAACAGAACTCGGTCTTATCTGGGGAGCCCAGTCTAACAACTCGATGAACTTCCGGGTAGCTGGTGGCTCCACCGCAGTGTCGATTACCGGTCTGGACATGACTGTTACTGGAAGAGTCAATGCTACCACACTAAACGCCTCTGGAAACGTGAATGCGACAGGCAACGTTAACGCCGGGAGCGCTACGCTCAATACAGCAGGGAATATCACAGGAGCCGCTTACGGAGCCTATGGTTCTCTGACCAACTGGGTTGATTCGGTATATGCCAAGAAGGGAGAAATTCCTAACGATATCGCAAGAGCCGGAGCCGCTTGGGACGCTGTAGGTCAGTATATTCTGGCGGGAGATCAATCTGGAGGCTCTGGCGGCCCGGGTACAATTAGAGCCGGGAACCAGTTGAGACCTTACTCTACGATCAGCTATACAGCCGGTAGCCTGCCCGCTGGCTCTTACAGATGCATGGGCGCGTTCGCTGCTGGCGGAAACCAGATCACTCTCTGGCAGCGCATTTCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3ecd80a1b12e79967caa5ac3eb712b1671b6ef9bd687d5d8e1b606c2d778d037
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6398
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50