Protein

View in Explore
Genbank accession
YP_009789753.1 [GenBank]
Protein name
tail fibers protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGKVTGSYASITRGVSEQVPQDRHPGQHFEQVNMVSDPVKGLVRRHGSITMDERPVTGMSPSPNLTPTQQAYARNYREYSFFVGGTEYAIIYMSRERNSGDTMPFCFVLNKATGKFLTVAYADQANLQDWIFGGISAITTVGKYVVMASNRIGPGYSVDDQYARSSQQWVATVRGGAYSRTYRLTVRRASDGVQFIAAYTTMASSYPNLLNTSDISLEGNPNYQKQVNDRVNDYNSRVNQWIGDAAKSITPEFIAAQLSASLANQGYTNQYAIGGTIVGDNSSSVGADDGGDGAMFRAVYNEVDDPSKLSPIHAVNKVVRVRPKGAPDPYYMIAVGDNPTAGPWQTVTWKETAAQVVQPGQVFAIGAVSNDGTTFYLASNAAALQAAIGGTVPGYAKSVCGDLNAEGAVPYFFGKRVTLLTVFMDRLVVVANGTVFMSRTGDYFNFFRKSMLTVNDDDPIEVYALGAEDDIISKCVTYNKDLFMFGVRKQYTISGRAVLTPKSASVSTAANEQDAMYAQPVVVGNLLYYGKYEDARNQVGPSPYAGRINQFQLGLFQDSPETYCVSQQLSRYIRGRPIEFATLSAPSCLIVRTDGYDNGLYVYSFIDQPGTQSRVFDAWSRWEWSSNVGRVIGLTTYEASIYAFVLRYDGSSVYVACEQFYMDSDLSVNPYLDAQRPAAQFAADTGYINRRNVAVIGDGATALANTVDRAWLGEFNKNFDDFWNRLDSDERNAGYTGIAFDSYVTLTPPFVRDNNGKALINGRLVVGRYSVSVSDTGGLDAYLLFSGDTSHVFSFNGRRVGLSNNQVGRQPITSAALQIPAGRSNTEHTMSFHSRKWLPMALTAIEWVGQLFLNSRRV
Physico‐chemical
properties
protein length:858 AA
molecular weight: 94172,16030 Da
isoelectric point:6,24759
aromaticity:0,11655
hydropathy:-0,24604

Domains

Domains [InterPro]
IPR058003
TTP
1–853
IPR058003
DC_0058
STR
1–858
DC_0058
YP_009789753.1
1 858
Architecture
STR
STR 1-858
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009789753.1
1 858
Domain Start End Length (AA) Confidence
N-terminal 1 197 197 0,9063
Central domain 198 396 200 0,2907
C-terminal 397 858 461 0,1337
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-197
Central
198-396
C-terminal
397-858

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RS-PI-1
[NCBI] 		1958965 Uroviricota > Caudoviricetes > Autographivirales > Ampunavirus > Ampunavirus RSPI1
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009789753.1 [NCBI]
Genbank nucleotide accession
NC_047816.1 [NCBI]
CDS location
range 16409 -> 18985
strand -
CDS
ATGGGTAAGGTCACAGGAAGTTACGCAAGCATCACGCGGGGAGTGAGTGAACAAGTCCCGCAGGATCGGCATCCCGGTCAACACTTCGAACAAGTCAACATGGTGTCCGATCCCGTCAAGGGACTCGTACGCCGCCACGGCTCAATCACGATGGACGAGCGGCCCGTCACGGGCATGTCGCCATCCCCGAATCTCACGCCAACACAGCAGGCGTATGCGCGGAACTACCGCGAGTACAGCTTCTTCGTCGGCGGCACGGAGTACGCAATTATCTACATGAGCCGGGAGCGCAACAGCGGTGACACGATGCCGTTCTGCTTTGTGCTCAACAAGGCCACGGGCAAGTTCCTGACCGTCGCGTACGCAGATCAAGCGAACTTGCAGGACTGGATTTTCGGCGGTATCAGTGCGATTACGACGGTCGGCAAGTACGTCGTCATGGCGTCGAACCGCATCGGCCCCGGCTACAGCGTGGACGACCAGTACGCCCGCAGCAGCCAGCAATGGGTCGCCACGGTGCGCGGCGGCGCATACAGCCGCACGTATCGCCTCACGGTGCGTCGGGCCTCGGACGGCGTGCAGTTCATTGCCGCGTACACGACGATGGCTTCGAGCTATCCGAACCTGCTGAACACGTCGGACATTTCGCTCGAAGGCAACCCGAACTACCAGAAGCAGGTCAACGACCGTGTGAACGACTACAACTCCCGCGTCAACCAGTGGATCGGTGACGCGGCCAAGTCGATCACGCCCGAGTTCATTGCGGCGCAGCTTTCGGCCTCACTTGCGAATCAAGGCTACACCAACCAGTACGCCATCGGCGGGACCATCGTGGGTGACAACTCCTCGTCGGTCGGTGCGGATGACGGCGGCGACGGCGCGATGTTTCGAGCCGTGTACAACGAGGTGGACGATCCGTCGAAGCTCTCGCCCATCCACGCGGTGAACAAGGTGGTGCGGGTTCGGCCGAAGGGCGCACCTGATCCGTACTACATGATCGCGGTAGGGGACAACCCAACGGCAGGTCCGTGGCAGACGGTGACGTGGAAGGAGACCGCAGCGCAGGTCGTGCAGCCGGGGCAAGTGTTCGCCATCGGTGCAGTCTCGAACGACGGCACGACGTTCTACCTCGCAAGCAACGCGGCAGCATTGCAGGCAGCAATCGGCGGCACGGTTCCGGGCTACGCAAAAAGCGTGTGCGGCGACCTCAACGCAGAAGGCGCAGTGCCGTACTTCTTCGGCAAGCGTGTGACGCTCCTCACGGTCTTCATGGACCGGCTGGTGGTCGTAGCGAACGGCACCGTCTTCATGTCGCGCACGGGCGATTACTTCAACTTCTTTAGGAAGTCGATGCTCACCGTGAACGACGACGACCCGATTGAGGTGTACGCACTCGGGGCCGAGGACGACATCATCAGCAAGTGCGTCACGTACAACAAAGACCTGTTCATGTTCGGTGTGCGCAAGCAGTACACGATCAGTGGTCGCGCTGTACTCACGCCGAAGTCTGCGTCGGTCTCGACCGCAGCGAACGAGCAGGACGCGATGTACGCGCAGCCGGTCGTGGTGGGCAACCTGCTCTACTACGGCAAGTACGAGGATGCCCGCAATCAGGTGGGACCGTCACCTTACGCTGGCCGCATCAACCAGTTCCAACTCGGCCTGTTCCAAGACTCGCCCGAGACGTACTGCGTGTCGCAGCAGTTGAGCCGATACATCCGTGGGCGACCTATCGAGTTCGCCACGCTGTCCGCTCCCTCGTGCCTGATCGTTCGTACGGACGGCTACGACAACGGGCTTTACGTCTACAGCTTCATTGACCAGCCGGGTACGCAGTCTCGCGTATTCGACGCGTGGTCCCGGTGGGAGTGGTCGAGCAACGTCGGGCGCGTCATCGGCCTCACGACGTACGAGGCGTCGATCTACGCGTTCGTGCTCCGGTACGACGGCAGCAGCGTCTATGTGGCGTGCGAGCAGTTCTACATGGACTCCGACTTGTCGGTCAATCCGTACCTCGACGCGCAGCGGCCCGCCGCGCAGTTCGCAGCAGACACTGGCTACATCAATCGGCGAAACGTTGCGGTCATCGGCGACGGCGCGACTGCGTTGGCGAACACCGTGGACCGCGCATGGCTCGGCGAGTTCAACAAGAACTTCGACGACTTCTGGAACCGGCTCGACAGCGACGAGCGCAATGCGGGGTACACAGGCATCGCGTTCGACTCGTACGTCACGCTCACGCCGCCTTTCGTGCGGGACAACAACGGCAAGGCGCTTATCAACGGGCGGCTCGTCGTGGGTCGCTACTCGGTCTCCGTGTCCGACACGGGCGGGCTGGATGCGTACCTGCTGTTCTCCGGCGACACCTCGCATGTCTTCTCGTTCAACGGGCGACGTGTGGGCCTCAGCAACAACCAAGTCGGGCGTCAGCCGATCACCTCGGCAGCGCTCCAGATTCCAGCGGGCCGCTCCAACACGGAGCACACGATGTCGTTCCATTCGCGCAAGTGGTTGCCGATGGCCCTCACGGCAATCGAGTGGGTCGGCCAGTTGTTCCTTAACTCTCGGCGCGTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
cff2cf3bd37dda52f11f6e8d404c098da647708cce004de8f0192f1c3a2912bb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8388
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and complete genomic analysis of a novel lytic bacteriophage infecting the Ralstonia solanacearum Su,J., Sun,H., Liu,J., Guo,Z., Fan,G., Gu,G. and Wang,G. 2017-09-19 — GenBank