Protein

View in Explore
Genbank accession
QYW03076.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,84
Protein sequence
MTDLKLSQIETTGNDEGKSVVAVAGGIQFESSDVLTTTQIASVKFDSKNGVLVLIKQNGDLVNIPGLPTSAMFGSGKQGKRGAPGAAGRDGRDGRDGSTGADGCGGLPGARGLNGTAGEPGRDGATGPDGDTGPDGKDGPTGPIGPTGPTGILGPRGNDGPSCIAGATGPTGPAPIETAVLSNVQPTASNVFVWLYPTANVSPAPPLPTISPLVASVSSLYMVGTRTVQGSDVFTSLAYLPVNARGGVGPYKYKWTITTTEGVNLDAIETNTCIVNFYLRLGLGADRTIKGTISCLVTDMGQPSRPTVTVKSALTVVARNPVSKTSGCIVFGSTVHTIAGSVPVERLSVGDMLASFSNQPKEFRKWSSPSLKGKNVYAAVRALKYGQEDHYFVINGQKFTHEHPVLIYDDKQWRYVPAREVKQGMQVRGRKGPVSVYECRRIDQLVNTVDIDVEPFDCYFVGDVLAHNTDMTAQAEKT
Physico‐chemical
properties
protein length:478 AA
molecular weight: 50003,81860 Da
isoelectric point:7,55267
aromaticity:0,06276
hydropathy:-0,21904

Domains

Domains [InterPro]
DC_0479
ATT
1–75
DC_0479 PTHR24637 DC_0444 IPR036844
IPR008160
STR
115–173
IPR008160 G3DSA:2.170.16.10
IPR008160
STR
115–175
IPR008160 cd00081
QYW03076.1
1 478
Architecture
ATT
STR
STR
ATT 1-75 | STR 115-321 | STR 326-468 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QYW03076.1
1 478
Domain Start End Length (AA) Confidence
N-terminal 1 359 359 0,8734
Central domain 360 467 109 0,2769
C-terminal 468 478 10 0,9933
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-359
Central
360-467
C-terminal
468-478

Taxonomy

  Name Taxonomy ID Lineage
Phage Erwinia phage pEa_SNUABM_13
[NCBI] 		2866688 No lineage information
Host Erwinia amylovora
[NCBI] 		552 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QYW03076.1 [NCBI]
Genbank nucleotide accession
MZ475891 [NCBI]
CDS location
range 76273 -> 77709
strand -
CDS
ATGACAGACTTAAAACTTTCGCAAATCGAGACAACAGGCAACGATGAAGGTAAATCCGTTGTTGCTGTTGCTGGTGGTATTCAATTCGAATCCTCCGATGTGTTGACAACGACACAGATCGCAAGCGTAAAGTTTGACAGTAAGAACGGCGTGCTCGTACTCATCAAACAGAATGGGGATTTAGTTAATATCCCCGGCCTGCCTACGAGTGCAATGTTTGGTTCAGGTAAGCAAGGTAAGAGAGGTGCGCCAGGCGCTGCTGGTCGTGACGGTCGTGATGGACGTGATGGCTCTACTGGTGCTGACGGCTGTGGTGGTCTCCCTGGTGCTAGAGGTCTTAACGGCACTGCGGGTGAACCTGGTCGTGACGGCGCTACTGGTCCTGACGGTGACACGGGTCCTGACGGTAAAGACGGGCCTACAGGGCCAATCGGTCCAACGGGTCCTACTGGCATACTCGGTCCACGAGGCAATGACGGTCCAAGCTGTATCGCGGGCGCAACGGGTCCTACTGGTCCTGCGCCTATCGAAACTGCTGTGCTGTCTAATGTGCAGCCCACTGCATCTAACGTGTTCGTGTGGCTGTACCCGACTGCTAACGTATCGCCAGCACCTCCTCTTCCTACTATCAGCCCACTTGTTGCTTCTGTGTCTAGTCTGTACATGGTAGGCACGCGCACAGTACAAGGGTCTGACGTATTCACCTCGCTTGCTTATCTGCCTGTCAATGCGCGTGGCGGTGTGGGTCCATACAAGTACAAGTGGACAATCACAACAACTGAGGGCGTTAATCTTGACGCCATAGAGACTAACACCTGTATAGTTAACTTCTATCTGCGTCTTGGTCTCGGTGCTGATCGTACAATCAAAGGCACCATCAGTTGTTTAGTAACAGACATGGGGCAACCCTCTCGACCTACAGTCACAGTGAAGTCTGCTCTGACCGTAGTTGCACGTAACCCTGTGAGTAAAACATCTGGCTGTATCGTGTTCGGCTCTACTGTGCATACAATCGCAGGCTCTGTGCCTGTTGAGCGTTTGTCTGTAGGTGATATGCTTGCATCGTTCTCCAATCAGCCTAAAGAGTTCCGTAAATGGTCCTCACCAAGTCTGAAAGGTAAGAATGTCTATGCTGCTGTTCGAGCACTCAAATACGGTCAGGAAGATCACTACTTCGTCATTAACGGACAGAAGTTTACGCACGAACATCCTGTGCTGATCTACGATGATAAGCAATGGCGCTATGTTCCTGCTCGTGAAGTTAAGCAAGGAATGCAAGTCAGAGGACGTAAAGGTCCTGTGTCTGTATACGAATGTCGTCGTATAGACCAACTCGTTAATACCGTAGACATAGACGTTGAACCTTTCGACTGCTATTTCGTTGGTGATGTTCTGGCTCATAACACGGATATGACTGCTCAGGCGGAGAAGACGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3c6a0ab71f55f91837affbbb40733c490af25e36b8551192e83e9456fa7d09b2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6554
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Erwinia phage pEa_SNUABM_13 Kim,S.G. and Park,S.C. 2021-01-07 — GenBank