Protein

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Genbank accession
NP_599053.1 [GenBank]
Protein name
short tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MHRIDTKTAQKDKFGAGKNGFTRGNPQTGTPATDLDDDYFDMLQEELCSVVEASGASLEKAQHDQLLTALRALLLSRKNPFGDIKSDGTVKTALENLGLGEAAKRDIGTGANQIPDMSLFASINTVTAAAQKFPSGLVLQCGQLNGAPNVSSTYGMKFPMTFSRVIAVVVTLNVTGAAGQPTVSATNVQNTGFDITVSPGSGYGASADAYYIAMGY
Physico‐chemical
properties
protein length:216 AA
molecular weight: 22608,15930 Da
isoelectric point:5,33692
aromaticity:0,06944
hydropathy:-0,14306

Domains

Domains [InterPro]
DC_0512
STR
1–176
DC_0512
G3DSA:2.60.40.3940
RBD
127–216
G3DSA:2.60.40.3940
IPR054075
RBD
132–216
IPR054075
IPR037221
RBD
144–214
IPR037221
NP_599053.1
1 216
Architecture
STR
RBD
STR 1-176 | RBD 177-216
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Enterobacteria phage SfV
[NCBI] 		55884 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
NP_599053.1 [NCBI]
Genbank nucleotide accession
NC_003444.1 [NCBI]
CDS location
range 16671 -> 17321
strand +
CDS
ATGCATCGTATAGACACGAAAACCGCGCAGAAGGATAAGTTCGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACAGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAAGAACTCTGCAGCGTGGTGGAGGCATCCGGGGCCAGTCTGGAGAAGGCGCAGCACGACCAGCTGCTTACCGCGCTTCGTGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACGGTGAAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGCGGCAAAACGGGATATAGGGACAGGGGCAAATCAGATACCTGATATGAGTTTATTCGCGTCAATTAATACCGTAACGGCTGCTGCGCAAAAATTTCCGTCCGGATTAGTTTTACAGTGCGGTCAGTTGAATGGTGCCCCGAATGTATCTTCAACATACGGGATGAAGTTCCCGATGACGTTCTCAAGAGTCATTGCTGTCGTAGTTACATTAAACGTTACTGGCGCGGCAGGGCAGCCGACTGTATCGGCGACAAATGTCCAGAACACTGGATTTGATATTACTGTGTCGCCTGGTTCAGGATACGGCGCATCTGCTGATGCGTATTACATTGCAATGGGATATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
cb812772da3054b9c266339664e8e2a1ad162bd340e0902eb0ad074774890861
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8322
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50