Protein

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Genbank accession
AGN12248.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAATVYNGVLQGTGAIHTQVLYTNSTGKNVRIVWNYFGVGNTHPSELGIAVGPSSNPNHNGGQDLDTMYLSSQANFAAGKYLAVQRNDDNTSNNAYGSYGGSFPTELMILNGSKISILIPAQIGSNTNALTYNFVAITED
Physico‐chemical
properties
protein length:140 AA
molecular weight: 14823,17800 Da
isoelectric point:5,39632
aromaticity:0,09286
hydropathy:-0,19786

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGN12248.1
1 140
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0014
Central domain 11 129 120 0,0005
C-terminal 130 140 10 0,9978
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-129
C-terminal
130-140

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-SSM5
[NCBI] 		536454 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGN12248.1 [NCBI]
Genbank nucleotide accession
HQ632825 [NCBI]
CDS location
range 64393 -> 64815
strand -
CDS
ATGGCAGCAACAGTATATAATGGAGTATTACAGGGAACTGGAGCAATTCACACTCAAGTCCTTTATACCAACAGTACTGGTAAAAATGTAAGGATAGTATGGAATTACTTTGGAGTAGGAAATACTCATCCTTCTGAACTTGGGATAGCTGTTGGTCCATCCTCTAATCCTAATCATAATGGTGGACAAGACCTTGATACAATGTATTTGTCATCACAAGCAAATTTCGCTGCAGGTAAATATCTTGCAGTGCAGAGGAATGATGATAATACATCAAACAATGCATATGGTTCTTATGGAGGTTCTTTTCCAACGGAACTTATGATACTTAATGGATCAAAAATTAGTATACTGATTCCTGCACAAATAGGTTCAAATACTAATGCTCTTACATATAATTTTGTAGCGATAACGGAAGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a2c17f3019842eeea2cf8193fa832496c563961e923facb8da782838470655e9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5682
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Prochlorococcus phage P-SSM5 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank