Protein

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Genbank accession
XOD43412.1 [GenBank]
Protein name
lower tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MELEKVGKLDLNEEPYLQPISNRGIGFYNLDKNTAKFQFVVQKDNKPLLISDKNVKGYAFFKAANGTEEKRPSTSGVLDVEFIDPMKGLIGVTVPQWFLKNVVDSEVLGEIYLSLNDVNNVGKDDTVVLGTFKFTVRDSLINQIESDIKVSYIRMFDELRSELEKKVQQLKQDIGDTQTLIESIKQTAEEYLIKINKAQADAIVSITDALISSNQSIDLEREEALRQIDAKRDAIKTDYDLASDTFQKTYDSNVDAFNSNVNQANTTIDEKLQIFNETLERDGFTTPEYVESKFTEKDWQKFKLTNDDGTNFYDANLQIDFDNNEQLMSLPIGTRYVVLTLNNPAGTNNNGWLTKYKRNGDAVLIQYQPYNSTVIYQKRFYKSWSKWERVGSDVVDTGWIDLQLVNSASPHNDLVSKGGFTSAYRTITQNGITKKMLRINATTIKHGQTIALLPKEFVKNLMFFSISAPRNKNSGRISLNTSGTVNFDATVDPSAWTDTDYIYGQYEWTE
Physico‐chemical
properties
protein length:510 AA
molecular weight: 57971,24240 Da
isoelectric point:4,95479
aromaticity:0,10196
hydropathy:-0,51686

Domains

Domains [InterPro]
G3DSA:2.60.40.3350
ATT
8–143
G3DSA:2.60.40.3350 Coil cd19958
IPR018913
ATT
18–164
IPR018913
DC_0196
STR
20–510
DC_0196
XOD43412.1
1 510
Architecture
ATT
STR
ATT 8-164 | STR 165-510
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage vB_SepS_E72m5
[NCBI] 		3398617 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOD43412.1 [NCBI]
Genbank nucleotide accession
PV036961.1 [NCBI]
CDS location
range 17945 -> 19477
strand +
CDS
ATGGAATTAGAAAAAGTAGGTAAACTTGATTTAAACGAAGAACCATATTTACAACCGATATCTAATAGAGGTATCGGTTTTTATAATCTCGATAAAAACACTGCTAAATTTCAATTTGTAGTACAAAAAGACAACAAACCTTTGTTAATCAGCGATAAGAATGTTAAAGGTTATGCTTTCTTTAAAGCTGCGAACGGAACAGAAGAAAAACGACCTAGTACATCAGGTGTATTAGACGTAGAATTCATTGATCCAATGAAAGGATTAATAGGTGTTACGGTACCTCAATGGTTTCTGAAAAACGTTGTCGATTCTGAAGTGTTGGGTGAAATTTACTTATCACTCAACGATGTAAACAACGTAGGAAAAGACGACACTGTTGTGTTAGGCACTTTTAAATTCACGGTACGCGACAGTCTTATCAATCAAATCGAAAGTGATATCAAAGTATCTTATATTCGAATGTTTGATGAATTGCGTTCGGAATTAGAAAAGAAAGTGCAACAACTTAAGCAAGATATAGGCGATACACAAACGTTGATTGAATCTATTAAGCAAACAGCTGAAGAATACCTCATTAAAATAAACAAGGCTCAAGCAGACGCTATTGTTTCAATTACAGACGCGTTAATATCGTCTAACCAAAGCATTGACCTAGAGAGAGAAGAAGCTTTAAGACAAATTGATGCTAAACGTGACGCTATCAAAACGGATTATGATTTAGCTTCAGATACATTCCAAAAAACTTATGATAGCAATGTGGACGCTTTTAATTCAAATGTTAATCAAGCTAACACAACAATTGATGAAAAGCTACAAATATTTAATGAAACCCTTGAAAGAGATGGCTTTACTACTCCTGAATATGTAGAAAGTAAGTTTACAGAAAAGGATTGGCAAAAATTTAAATTAACAAATGATGATGGTACTAATTTTTATGATGCCAACCTACAAATAGATTTCGACAATAACGAACAATTAATGTCTTTACCGATAGGAACTAGATATGTTGTTCTTACTTTGAACAATCCAGCTGGAACAAATAATAATGGGTGGTTAACAAAGTACAAAAGAAATGGAGATGCTGTTCTAATACAATACCAACCTTACAATTCAACTGTAATCTACCAAAAAAGATTTTATAAGAGTTGGAGCAAATGGGAACGTGTTGGTTCAGATGTTGTAGATACTGGTTGGATTGATTTACAACTAGTGAACAGTGCGTCGCCTCATAACGACTTAGTTTCCAAAGGTGGTTTTACTAGTGCGTACAGAACAATCACACAAAATGGAATTACTAAGAAAATGTTACGCATTAATGCTACAACTATCAAACATGGACAGACTATTGCACTTTTACCTAAAGAATTTGTCAAAAACCTAATGTTTTTCTCAATAAGTGCTCCTAGAAACAAAAACAGCGGACGTATTTCGTTGAACACATCAGGAACAGTGAATTTTGACGCTACTGTAGATCCATCAGCGTGGACTGATACAGATTATATTTACGGTCAATATGAATGGACGGAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
86d101c47dbfcc92e9967fe29d7359e9a855409473407653ba6a603f6236e8d7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7787
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Virion content unpacked by long-read sequencing: Stress-induced changes in transmitted staphylococcal mobilome due to phage-satellite interactions Botka,T., Smetanova,S., Vinco,A., Kucerova,E., Rovnakova,K., Sivakova,A., Maslanova,I. and Pantucek,R. — — GenBank