Protein

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Genbank accession
AGN12284.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MAFGLLNSIIPQTGTVTTLHTGDTDKLTVGKITVGSKNYNPSRIQIGYKDGTGDVKYFEYNRYIKYGEVIETENLYLGAGQDLVIRSTEPDVNFLFYGETSNDVINPVRSGVLSHTLSTGATKQALFTAPVGSQSKVTVSICNLGPDVATVKLGLSNGNLALFDATEYLDFGFQIGPGQTYTRPDIKLGEGQSLIGFSNPNSKVTFLCHGKLFYEVSGLPTSDDFVVLGNSRFDGNVGVGRSATVKLDVVGDAIITGNTIIGGDAKIKTTNYNEDIDNVRNVRSIGISTFTGDFTIKGDTTDIQSSTLKTKSIDIVLGNTTTGSFTGNVSAGSSHITNVLPTDNLAKDIVITPTSLPGGLNITGSPTVLSIGSSTVNINQTVSGNGSGLATFNISAPSDEIANNGGIIIKGTTDKSILWKNSSGRFEFSNGATLKTGILQIVDAASEITIGSTTVITANKVFGRLLTDLIEDGNDTTNYIPTAIAVTKRSRQVSAEGYFASNSI
Physico‐chemical
properties
protein length:504 AA
molecular weight: 53064,70200 Da
isoelectric point:5,17555
aromaticity:0,07143
hydropathy:-0,05873

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGN12284.1
1 504
Domain Start End Length (AA) Confidence
N-terminal 1 250 250 0,8357
Central domain 251 449 200 0,4182
C-terminal 450 504 54 0,7079
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-250
Central
251-449
C-terminal
450-504

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-SSM5
[NCBI] 		536454 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGN12284.1 [NCBI]
Genbank nucleotide accession
HQ632825.1 [NCBI]
CDS location
range 96541 -> 98055
strand -
CDS
ATGGCATTTGGACTGTTAAACAGCATTATACCACAAACTGGAACAGTTACTACTCTTCATACTGGAGATACTGATAAGTTAACTGTAGGTAAGATAACCGTTGGTAGTAAGAATTATAATCCATCTAGGATACAGATTGGATATAAAGACGGTACTGGTGACGTAAAGTATTTTGAGTACAATAGATATATTAAGTATGGTGAAGTAATAGAAACTGAGAATCTTTATTTAGGTGCTGGACAAGATTTAGTTATAAGATCAACTGAACCTGATGTAAACTTTTTATTTTATGGTGAAACTAGTAATGATGTTATAAATCCTGTAAGATCGGGTGTATTAAGTCATACTTTATCTACTGGTGCAACAAAACAAGCATTGTTTACTGCTCCTGTAGGATCTCAGTCTAAAGTAACAGTATCTATCTGTAATTTAGGACCTGATGTAGCAACAGTAAAACTTGGTCTTTCAAATGGTAATTTAGCACTATTTGATGCTACAGAATATTTAGATTTTGGTTTTCAAATAGGACCAGGTCAAACATATACTAGACCTGATATTAAATTGGGGGAAGGGCAGTCTTTAATTGGATTTTCTAATCCCAATTCAAAGGTAACATTCCTTTGTCATGGTAAATTATTCTATGAAGTAAGTGGATTACCTACGAGTGATGATTTTGTTGTTCTTGGTAACTCTAGGTTTGATGGTAATGTTGGTGTAGGAAGATCTGCTACTGTAAAATTAGATGTAGTTGGTGATGCAATTATTACTGGTAATACTATTATTGGTGGTGATGCAAAGATTAAGACTACAAATTATAATGAAGATATTGATAATGTTAGAAATGTAAGATCTATAGGAATATCTACATTCACGGGTGATTTTACTATCAAAGGTGATACTACTGATATACAATCTTCTACATTAAAAACAAAATCTATTGATATTGTTTTAGGTAATACCACAACAGGATCTTTTACTGGAAATGTATCTGCTGGATCAAGTCATATTACCAATGTTTTACCTACAGATAACCTAGCAAAGGATATTGTTATTACTCCAACAAGTCTTCCTGGTGGATTAAATATTACTGGATCACCAACGGTTCTATCGATAGGTTCTTCAACTGTTAATATAAATCAAACGGTTTCTGGTAATGGATCTGGTCTTGCAACATTCAATATATCAGCACCTTCAGATGAGATTGCTAATAATGGTGGAATTATCATTAAAGGAACTACTGACAAATCTATACTATGGAAAAATTCTTCAGGTAGATTTGAGTTTAGTAATGGTGCTACTTTAAAAACTGGAATACTTCAAATAGTAGATGCAGCATCAGAAATTACAATTGGATCTACAACTGTTATTACTGCTAATAAGGTTTTTGGTAGATTACTTACCGATTTAATTGAAGATGGTAATGATACTACAAATTATATTCCAACAGCAATAGCAGTTACTAAGAGATCAAGGCAAGTATCAGCAGAAGGATATTTTGCATCAAATTCAATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0e20cd520ca07671e431bb82284e9c745d485d25e305cc3e4a8926bc7ea06dba
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6428
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Prochlorococcus phage P-SSM5 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank