Protein

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Genbank accession
AAQ96486.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGRFAKITNFIRRAAGVSDVRCNPGGGATVDAYHAQPAGDDCHPLPTDTAVLVETPRSNNYAAVGVVDPNNRQTAGPGERRVYSRNADGEQVAEVFLHDDGQVRVSNDEGFVDLAADGTIQASNGQASATLQGTSITLDDGAGGSISINGGVITLTGTAIRLIGPVDANGATISEAGQITDADGLSVHGHNHTQANDSDNDVQQPTSTAQIPAP
Physico‐chemical
properties
protein length:214 AA
molecular weight: 21897,42850 Da
isoelectric point:4,49775
aromaticity:0,03271
hydropathy:-0,36916

Domains

Domains [InterPro]
DC_1855
STR
1–212
DC_1855
G3DSA:6.20.150.20
Unmapped
86–190
G3DSA:6.20.150.20
AAQ96486.1
1 214
Architecture
STR
STR 1-212 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AAQ96486.1
1 214
Domain Start End Length (AA) Confidence
N-terminal 1 72 72 0,7773
Central domain 73 203 132 0,0145
C-terminal 204 214 10 0,9824
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-72
Central
73-203
C-terminal
204-214

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VP16T
[NCBI] 		238892 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AAQ96486.1 [NCBI]
Genbank nucleotide accession
AY328852 [NCBI]
CDS location
range 16002 -> 16646
strand +
CDS
GTGGGAAGGTTCGCCAAGATAACCAACTTTATACGCCGAGCGGCTGGCGTCAGCGATGTGCGCTGCAACCCCGGCGGCGGTGCTACGGTCGACGCGTACCATGCGCAGCCCGCTGGTGACGACTGCCACCCGCTGCCAACTGACACCGCCGTGCTGGTCGAGACCCCACGGTCGAACAACTACGCGGCCGTCGGCGTCGTGGACCCTAACAACCGACAGACAGCTGGACCAGGCGAGCGTCGCGTCTACTCGCGTAACGCAGACGGCGAGCAGGTGGCCGAGGTCTTTCTGCATGACGACGGTCAGGTCCGCGTTTCTAATGATGAAGGTTTTGTCGACTTAGCGGCCGATGGTACAATCCAAGCAAGCAACGGGCAGGCGTCGGCCACACTCCAAGGGACATCTATCACCCTAGACGACGGGGCAGGCGGCAGCATATCAATCAACGGCGGCGTGATAACGCTAACGGGTACGGCCATCAGGCTAATAGGCCCAGTCGACGCCAACGGTGCGACGATTAGCGAAGCGGGTCAGATCACCGACGCAGACGGGCTGTCAGTGCACGGGCACAACCACACCCAGGCGAACGACAGCGACAACGACGTCCAACAACCAACAAGCACGGCGCAGATACCTGCACCATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
8cb4fcc99e10450b0657370e31661e45a9c4da24a2e3bd43a4bbfd1fa0cc11b0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8009
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequences of two closely related Vibrio parahaemolyticus phages, VP16T and VP16C Seguritan,V., Feng,I.W., Rohwer,F., Swift,M. and Segall,A.M. 2003 14563879 GenBank