Protein

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Genbank accession
AGK88045.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MVDTLVENDNALSQQIAGITNESLFKLTGDQAIQDASVSGEEYPIGITFMDIGQANDTGYPTRFGFVKNEKYSNFRFIQYYYGTGNEAGSYFDSTGTWCRHWWTGSGWTEWHKISGFCHANIGTTGKQLLTKGEYQKVLFNRKIKDSHNNFDIKNNRFICPENGMYSVNAGVYIESFQRYANFELSIYLNGKRYKNIAHQRQSPVSPSDTLSFSMGLYGAANVPANKGDYLEMYLYVGYDGDVSRYVSDNSGWYNYFDISEIGGRNFPRV
Physico‐chemical
properties
protein length:270 AA
molecular weight: 30707,60010 Da
isoelectric point:5,75213
aromaticity:0,15926
hydropathy:-0,55815

Domains

Domains [InterPro]
DC_0239
RBD
60–270
DC_0239
IPR008983
RBD
122–259
IPR008983
IPR008983
RBD
133–239
IPR008983
AGK88045.1
1 270
Architecture
RBD
RBD 60-270
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGK88045.1
1 270
Domain Start End Length (AA) Confidence
N-terminal 1 121 121 0,3682
Central domain 122 259 139 0,0941
C-terminal 260 270 10 0,9829
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-121
Central
122-259
C-terminal
260-270

Taxonomy

  Name Taxonomy ID Lineage
Phage Bacillus phage PBP180
[NCBI] 		2558359 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus CCTCC
[NCBI] 		1094346 Ascomycota > Leotiomycetes > Helotiales > Sclerotiniaceae > Monilia >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGK88045.1 [NCBI]
Genbank nucleotide accession
KC847113 [NCBI]
CDS location
range 21787 -> 22599
strand +
CDS
ATGGTCGATACACTTGTGGAGAATGACAATGCGCTCAGTCAACAAATAGCAGGGATCACGAATGAAAGTTTATTCAAATTAACAGGCGATCAAGCCATTCAAGATGCATCAGTCAGCGGCGAGGAATATCCAATAGGTATTACGTTTATGGATATTGGACAAGCGAATGATACCGGTTATCCTACGAGATTTGGCTTTGTGAAAAATGAAAAATATAGTAACTTTCGATTTATTCAATATTACTATGGAACTGGAAACGAAGCAGGCAGCTATTTTGATAGTACAGGTACGTGGTGTCGTCACTGGTGGACGGGGTCCGGCTGGACTGAATGGCACAAAATTTCAGGGTTTTGTCATGCCAATATAGGTACAACTGGAAAGCAGTTATTAACCAAAGGAGAGTATCAAAAAGTCCTTTTTAATCGAAAAATTAAAGACAGTCATAACAATTTTGATATCAAAAATAATCGGTTCATCTGTCCTGAAAACGGAATGTATTCAGTGAATGCAGGTGTTTATATTGAAAGCTTTCAACGATACGCGAACTTTGAATTATCGATCTATTTGAATGGAAAAAGATATAAAAATATTGCACATCAAAGGCAAAGTCCGGTAAGCCCATCTGATACGTTGAGCTTTAGTATGGGACTTTATGGTGCTGCCAATGTACCGGCTAATAAGGGGGACTATTTAGAAATGTACCTATATGTAGGGTATGACGGAGACGTTAGTCGTTATGTATCTGATAATTCAGGTTGGTACAACTATTTCGATATTTCGGAAATAGGTGGACGAAATTTCCCAAGAGTGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
c41cd3dd05497849cc5fbcb75e0466f7056427ad40aaa4a55ba3a97e8224d54b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7939
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Biological and genomic analysis of a PBSX-like defective phage induced from Bacillus pumilus AB94180 Jin,T., Zhang,X., Zhang,Y., Hu,Z., Fu,Z., Fan,J., Wu,M., Wang,Y., Shen,P. and Chen,X. 2014 24154951 GenBank