Protein

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Genbank accession
ABA47002.1 [GenBank]
Protein name
structural protein
RBP type
TF
Evidence RBPdetect
Probability 0,82
Protein sequence
MAKTGLLAQSKPAAATNTVLYKAPIGNSASAVLTVANDGTGSAYSLALKDWDQKLTLDANSYLLHPGDVITAYRIDVDTDMNANSGFTSGLALTSGDEEKVFQFESFYVPAFTEIFVKDVALRQVTIESVTGNFEVGQTLTTGTSPDDTEATVFAVDDTGANTILYIGPSTINGTGAEFTDGDIVATAFGGSATISAGGIAAAVNAFVFSTTTAGGVYDYAQNGLEIFADRAYRFDVSDSSMTGRDFKLSITANGEWGPDGVIGGDPSDDGTEYTTNKTINGTAGSASAYVQYDLAGTGITGSLYFYDGGTGTAGNSIYGGTSRVLSTSNQYTYTGMYVYNVNGDLSGGTVTFTHNDVTYTIDSVTVGAYGYVRSYVGTELRVCLGAGSTDFAGTNTFRDNPISQTATRNTATVSSVDAGSADVDNESYLIISKTNAANNIDRTTSLVVGPGEKLIVSSTTQNNVFNLVGFEDVSTSFTTRVNVADYGGAGAGDGGGGVAP
Physico‐chemical
properties
protein length:501 AA
molecular weight: 51719,65070 Da
isoelectric point:4,09800
aromaticity:0,09780
hydropathy:-0,07585

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage syn9
[NCBI] 		382359 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus
[NCBI] 		1129 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae
Host Synechococcus sp. WH 8012
[NCBI] 		166313 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ABA47002.1 [NCBI]
Genbank nucleotide accession
DQ149023 [NCBI]
CDS location
range 22406 -> 23911
strand +
CDS
ATGGCAAAAACAGGACTACTTGCACAATCGAAGCCAGCGGCGGCAACTAATACGGTCTTATATAAAGCACCTATTGGTAACTCTGCCAGTGCTGTGCTTACGGTTGCAAACGACGGCACAGGATCTGCATATTCCTTAGCATTAAAGGATTGGGATCAGAAACTAACCCTAGATGCTAACTCATATCTTCTTCACCCTGGTGATGTAATCACGGCATATCGTATTGATGTAGATACAGATATGAATGCTAACTCTGGATTTACATCTGGTCTTGCACTTACATCTGGGGATGAAGAAAAAGTTTTCCAGTTTGAATCATTCTATGTCCCTGCTTTTACTGAGATTTTTGTAAAAGATGTTGCTCTTCGTCAAGTTACTATTGAATCTGTAACTGGTAACTTTGAAGTTGGTCAGACTCTTACAACTGGCACTTCCCCTGATGACACAGAAGCAACTGTATTTGCTGTAGATGACACGGGTGCAAATACAATTCTTTACATCGGTCCCTCTACCATCAATGGCACTGGAGCAGAATTTACTGATGGTGATATTGTAGCAACTGCTTTTGGTGGTAGTGCTACTATTTCAGCAGGTGGTATTGCAGCAGCAGTGAATGCATTTGTATTCTCAACAACTACAGCAGGTGGTGTTTACGATTATGCTCAGAATGGTTTAGAAATCTTTGCTGACCGTGCATATCGTTTTGATGTCTCTGACTCTTCTATGACAGGTAGAGATTTCAAACTGTCTATTACTGCTAATGGTGAATGGGGTCCTGATGGTGTGATTGGTGGAGATCCCTCTGACGATGGCACAGAGTATACTACCAATAAAACTATCAACGGCACTGCTGGTAGTGCTAGTGCATATGTCCAATATGATCTTGCTGGCACTGGCATTACTGGTAGTTTGTATTTCTATGATGGTGGCACAGGCACCGCAGGTAACTCTATCTACGGTGGCACCAGCAGAGTACTTAGCACATCAAACCAGTATACTTACACTGGCATGTATGTTTATAATGTAAATGGTGATCTGAGTGGTGGCACCGTAACCTTTACTCATAACGACGTTACATATACTATTGACTCTGTAACCGTAGGTGCATATGGTTATGTCCGTAGTTATGTTGGCACTGAATTGCGTGTATGTCTTGGTGCAGGATCTACAGACTTTGCAGGCACTAATACATTCAGAGATAACCCAATTTCACAAACTGCAACTAGAAACACTGCAACTGTCAGTAGTGTAGATGCAGGATCTGCTGATGTAGATAATGAGAGTTATCTGATCATTAGTAAAACCAATGCTGCAAATAACATTGATCGCACAACTTCTTTGGTTGTTGGTCCTGGAGAAAAACTAATTGTAAGTTCTACAACACAAAACAATGTGTTTAACCTTGTAGGATTTGAAGATGTTTCCACTTCCTTCACTACTAGAGTTAATGTTGCTGATTATGGCGGCGCAGGTGCTGGCGATGGTGGCGGCGGAGTCGCTCCCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
1df2838ef633a083d886bf1b4f86c7dbef434f6a4986f31cdf9a83c878af559b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3967
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic and structural analysis of Syn9, a cyanophage infecting marine Prochlorococcus and Synechococcus Weigele,P.R., Pope,W.H., Pedulla,M.L., Houtz,J.M., Smith,A.L., Conway,J.F., King,J., Hatfull,G.F., Lawrence,J.G. and Hendrix,R.W. 2007 17564603 GenBank
Bacteriophage Syn9 Hendrix,R.W., Pedulla,M.L., Peebles,C.L., Pope,W., Houtz,J.M., Smith,A.L., Hatfull,G.F. and King,J.A. 2003-10 — GenBank