Protein

View in Explore
Genbank accession
WWO60263.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MIKMPRASAKGFYRVEVLRPDGSVKSDTGEFPNLITTIGGTRLLQDFGRFAGRCFAGTGTAPPQVTDSQLVNEVMFSGQGVDSHARNASTKPFYHQSQWVFTFGAATANQTIGEIGVGDNYSPYTLSSRALPRDTAGNVTTISVLVGEILRVTYVLRMYFDMTKYEGSFEANGVTYNYVAMATQMDDSSFWNLRVGYSLRPDSSGTGFYQHPADTKFVDEGLISQRLDKGVESGQSYNYNPSEGTITGSKYTFKVIGALAFANFTKGINVIRIGHSTGNYRSGPSYTILLDKYMPKTADMSLEFVFDLDYAINVP
Physico‐chemical
properties
protein length:315 AA
molecular weight: 34593,40320 Da
isoelectric point:6,43562
aromaticity:0,12381
hydropathy:-0,25016

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WWO60263.1
1 315
Domain Start End Length (AA) Confidence
N-terminal 1 305 305 0,2983
Central domain 306 305 1 0,0089
C-terminal 306 315 9 0,9892
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-305
Central
306-305
C-terminal
306-315

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage SB3
[NCBI] 		3117472 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Xanthomonas euvesicatoria
[NCBI] 		456327 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WWO60263.1 [NCBI]
Genbank nucleotide accession
PP079414.1 [NCBI]
CDS location
range 37250 -> 38197
strand +
CDS
ATGATTAAGATGCCACGCGCAAGCGCAAAGGGCTTTTACCGGGTGGAGGTTCTCCGTCCGGACGGCTCAGTAAAGTCGGACACCGGGGAGTTCCCCAACCTCATCACTACCATCGGCGGCACGCGTCTGCTACAGGACTTCGGCCGGTTCGCTGGTCGTTGTTTTGCAGGTACTGGCACAGCTCCTCCGCAGGTCACTGACTCTCAGCTGGTGAACGAGGTCATGTTCAGTGGACAGGGCGTGGATTCTCACGCTCGCAACGCGTCTACCAAGCCGTTCTACCATCAGTCTCAGTGGGTCTTCACGTTCGGTGCAGCCACGGCTAACCAGACCATCGGTGAGATCGGTGTCGGTGACAACTACTCGCCGTACACGCTGTCGAGCCGTGCACTTCCCCGGGATACTGCGGGCAACGTGACGACCATCTCCGTGCTGGTTGGCGAGATTCTGCGAGTGACCTACGTCCTTCGCATGTACTTCGACATGACCAAGTATGAGGGTTCGTTCGAGGCTAACGGTGTGACCTACAACTACGTGGCCATGGCTACGCAGATGGATGACTCCTCGTTCTGGAACCTCCGAGTCGGCTACTCACTACGGCCCGATAGCTCGGGTACTGGTTTCTACCAGCATCCCGCCGATACGAAGTTCGTAGACGAAGGTCTGATTAGTCAGCGTCTCGACAAGGGCGTTGAGTCTGGTCAGTCGTACAACTACAACCCGTCCGAAGGAACCATCACGGGTAGCAAGTACACCTTCAAGGTGATCGGTGCGTTGGCCTTCGCCAACTTCACCAAGGGCATCAACGTGATCCGCATCGGGCACAGTACGGGTAACTACCGCAGCGGCCCCTCGTACACTATCCTTCTGGACAAGTACATGCCGAAGACTGCGGACATGTCGCTGGAGTTCGTCTTCGACCTCGACTACGCGATCAACGTCCCGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
2e7fa7276e5f32ea88fab99e2b66cf4d4329666899a6b8436b56d6ac7d8f6b7c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7002
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel lytic viruses for Xanthomonas sp. and Stenotrophomonas maltophilia Petrzik,K., Brazdova,S., Sovova,L. and Neoralova,M. 2023-07-17 — GenBank