Protein

View in Explore
Genbank accession
URY12694.1 [GenBank]
Protein name
tail fiber
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MAEYKLSELNSIDTVRSEDLLHLRVIKRSDMLGDEDRKMTYANFLASFKLERFLQLTGGDMVGNLGIVKLRYGGKDLLDPTGSSEVILGDTAKTFRINASALRLTVNDATRSATVYHTLNKPSPNELGMRTNTENDARYAMKETENTFLARQIININGVGLTLKSILPDGGAYIEARDSNNALRFTVGNLTSSTDVTLVNSKGATLTLGTNSVSVDKNFEINGQVQPNNWNNLDARFFTQTAADQRFAKLNASNNFVGVNNFNGKTYVIADSNALNLRAVTENAALFMRGYNSAGTGTWYVGQPDGTQSEIVLANQMTNVNLKIATEFSFNKAINVAGQVKPSDFSNFDTRYVPSSLTNVLARTNAENVFTSPQTINTDSDNPFRLQTTVQDSGIYMSAHNANGSRRWWLGIGGAGQNNVVLNNDVTGKAINIGTDLDVNTHVNIVGQVRPSDWSNFDSRYYTQSAANSRYMLSGVSGTGTEVGDGTGVAWDAKTGLYNVTSASGGSSHLVYQMHLGIGASTPSAQLRFEYKNGGIYYRTARDSVGFEEFWTKIYTDKAKPTPSELGAYTKAEVDQRIASAVTDATDLKKVYPVGIVTFFASNVNPNTAFPGTTWTYLTEGANRTIRIGSENGSDVKGLGGADTVALSVGHIPAHTHGFSGTTSWFDYGTKYTDGQGAHDHDRGNMEISGNFGWFRSDNNSFYVADGAFAMSGSQGGHSWTGSNFTYGAPVNFYASRTWTGRTSWVGAHAHGVGIGGHNHTFSGDTGATGSGAAFSVLNTYIKLMAWVRTA
Physico‐chemical
properties
protein length:791 AA
molecular weight: 85469,40750 Da
isoelectric point:6,47916
aromaticity:0,09987
hydropathy:-0,36346

Domains

Domains [InterPro]
DC_1993
STR
101–359
DC_1993 IPR048388 IPR022246
G3DSA:6.20.80.10
STR
158–217
G3DSA:6.20.80.10 G3DSA:6.20.80.10 DC_1993
IPR048388
ATT
170–246
IPR048388 IPR048388 G3DSA:6.20.80.10
URY12694.1
1 791
Architecture
STR
ATT
STR
ATT
STR
ATT
STR
STR 101-169 | ATT 170-246 | STR 247-271 | ATT 272-357 | STR 358-381 | ATT 382-473 | STR 474-787 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
URY12694.1
1 791
Domain Start End Length (AA) Confidence
N-terminal 1 159 159 0,6201
Central domain 160 358 200 0,2649
C-terminal 359 791 432 0,9017
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-159
Central
160-358
C-terminal
359-791

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage ESh21
[NCBI] 		2950767 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shigella sp.
[NCBI] 		625 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
URY12694.1 [NCBI]
Genbank nucleotide accession
ON528731.1 [NCBI]
CDS location
range 69576 -> 71951
strand +
CDS
ATGGCTGAATATAAGCTAAGTGAGCTAAACAGTATTGACACAGTTCGCTCAGAAGATTTACTTCACCTAAGAGTCATCAAAAGGTCTGATATGCTTGGTGATGAAGACCGTAAAATGACCTATGCAAATTTCCTTGCCTCTTTCAAACTAGAAAGATTCTTACAACTAACTGGTGGAGATATGGTAGGGAATCTTGGCATCGTTAAATTAAGATACGGTGGAAAAGACTTATTAGACCCAACAGGTTCTTCTGAGGTTATTCTTGGTGACACTGCCAAAACCTTTAGAATTAATGCGAGTGCTTTAAGATTAACTGTAAACGATGCCACAAGGTCTGCAACAGTTTATCACACACTTAATAAACCATCTCCTAATGAATTAGGTATGAGAACTAACACTGAAAATGATGCAAGATATGCTATGAAGGAAACTGAAAATACTTTCTTGGCAAGACAAATCATTAATATCAACGGTGTTGGTCTAACACTTAAAAGTATCTTACCAGATGGTGGAGCATATATTGAAGCAAGGGATTCAAACAATGCTTTAAGATTCACAGTTGGTAACTTGACTTCTAGTACTGATGTTACATTAGTTAATAGTAAGGGTGCTACGTTGACTCTTGGAACAAACTCTGTTAGTGTTGATAAGAATTTTGAAATCAATGGACAGGTTCAGCCTAATAACTGGAATAACCTTGATGCAAGATTCTTTACACAGACTGCTGCTGACCAGAGATTTGCAAAACTTAATGCAAGTAATAACTTTGTTGGGGTTAACAATTTCAATGGTAAGACTTATGTTATTGCAGATAGTAATGCACTTAACTTAAGAGCGGTTACAGAGAATGCTGCATTATTTATGCGTGGTTATAACAGCGCTGGGACAGGAACTTGGTATGTAGGTCAACCAGATGGTACGCAGTCTGAGATTGTTTTAGCAAACCAGATGACAAATGTTAACTTGAAAATTGCTACAGAGTTTTCATTTAACAAAGCTATCAATGTAGCTGGTCAGGTAAAACCAAGTGACTTTTCTAACTTTGATACAAGATATGTTCCAAGCTCTTTGACGAACGTTCTTGCAAGAACTAATGCTGAAAACGTTTTTACTAGTCCACAGACTATCAATACTGACAGCGACAATCCTTTTAGACTACAGACAACAGTACAAGACTCTGGAATCTACATGTCTGCACATAATGCTAATGGGAGCAGGAGATGGTGGTTGGGTATTGGTGGTGCTGGTCAAAACAATGTGGTACTTAACAATGATGTAACAGGAAAGGCAATCAATATTGGTACTGATTTAGATGTGAATACACATGTAAATATTGTTGGACAAGTAAGACCAAGCGATTGGTCAAACTTTGACTCAAGATACTACACACAATCTGCTGCAAACTCAAGATATATGTTGTCTGGTGTATCTGGAACTGGAACAGAAGTAGGTGATGGCACAGGTGTTGCTTGGGATGCAAAAACAGGTTTGTACAATGTTACAAGTGCAAGTGGTGGTTCATCTCACTTAGTTTACCAAATGCACCTTGGAATTGGTGCATCTACACCTTCTGCACAGCTTAGGTTCGAATACAAAAATGGTGGAATCTACTATAGAACAGCAAGGGATAGTGTTGGTTTTGAGGAGTTTTGGACTAAAATCTATACAGATAAGGCTAAGCCTACACCTTCTGAACTTGGTGCTTACACCAAGGCTGAAGTAGACCAACGTATTGCTTCCGCTGTAACTGATGCCACAGACCTTAAGAAAGTGTATCCAGTTGGTATTGTGACGTTCTTTGCTTCTAATGTCAACCCAAATACAGCTTTCCCAGGCACTACTTGGACTTACTTAACTGAGGGTGCAAACAGAACTATTAGGATTGGTTCTGAAAATGGCTCTGATGTGAAAGGTCTTGGTGGTGCTGATACGGTTGCATTAAGTGTTGGTCACATCCCTGCACACACTCACGGCTTCTCTGGGACAACTTCTTGGTTTGACTATGGAACTAAGTACACAGATGGTCAGGGTGCTCACGACCATGACAGAGGTAATATGGAAATCTCTGGTAACTTTGGATGGTTTAGAAGTGATAATAACTCGTTCTACGTTGCAGACGGTGCTTTTGCAATGAGTGGTAGCCAAGGTGGGCATAGCTGGACAGGTTCTAACTTCACTTATGGTGCGCCAGTTAACTTCTATGCTTCCAGAACTTGGACAGGTAGAACAAGTTGGGTAGGTGCTCATGCTCACGGTGTAGGTATTGGTGGACACAACCACACATTCAGTGGTGACACTGGTGCGACTGGTTCTGGTGCAGCATTCAGTGTTCTTAACACTTACATTAAACTAATGGCTTGGGTAAGAACTGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
77fb959ade36215239fad94141f091572f31cb27ebd09c66d04d7b70749ba295
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6695
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Design of a bacteriophage cocktail active against Shigella species and testing of its therapeutic potential in Galleria mellonella Filippov,A.A., Su,W., Kevorkian,R.T., Sergueev,K.V., Srijan,A., He,Y., Lurchachaiwong,W., McGann,P.T., Ellison,D.W., Swierczewski,B.E. and Nikolich,M.P. — — GenBank