Protein

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Genbank accession
AVO24283.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MAITLPTLPSLPTLPTQLPSASLTPAAVLNVVSLIAKNLPKINPPTPLYAIINADTGLPLTIPDSWGEMTLHFAEYQTTDYPIEAGGFMSANKVRRPDGVEVTLIKTGTDLARATWLEAIRVQIAADPIARYHILTPSGIYQSQTITRLSHQTRPDRGSNLLYLDLQLTEVPQITTPSLQGDNAVEPEAGPTQEVGRVYPSDASPQVASLAIAGASTGSPLLGA
Physico‐chemical
properties
protein length:224 AA
molecular weight: 23781,83270 Da
isoelectric point:4,95803
aromaticity:0,04911
hydropathy:-0,00089

Domains

Domains [InterPro]
DC_0601
STR
1–222
DC_0601
AVO24283.1
1 224
Architecture
STR
STR 1-222 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage XPV2
[NCBI] 		2099861 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Xanthomonas oryzae pv. oryzae
[NCBI] 		64187 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xanthomonas > Xanthomonas oryzae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVO24283.1 [NCBI]
Genbank nucleotide accession
MG944235.1 [NCBI]
CDS location
range 28321 -> 28995
strand -
CDS
ATGGCGATCACGCTACCGACGCTCCCGAGCCTACCGACCCTGCCGACGCAGCTGCCGTCGGCGTCGCTGACCCCTGCGGCGGTCCTGAACGTCGTGTCGCTGATCGCCAAGAACCTACCGAAAATCAATCCGCCCACGCCGCTATACGCGATCATCAACGCCGACACCGGTCTGCCGCTCACGATCCCCGATAGCTGGGGCGAGATGACGCTGCATTTTGCCGAGTACCAGACGACCGATTATCCCATCGAGGCGGGCGGGTTTATGTCGGCCAATAAGGTGCGTCGCCCGGACGGCGTCGAAGTAACGTTGATCAAGACCGGTACGGACCTTGCGCGCGCCACGTGGTTGGAGGCGATCCGCGTACAGATCGCCGCCGATCCGATTGCGCGCTATCACATCCTCACCCCGTCGGGAATTTACCAGTCGCAGACGATCACACGGCTGTCGCACCAAACCCGCCCGGATCGCGGTAGTAACCTGTTGTACCTCGATCTGCAATTGACGGAGGTGCCGCAGATCACGACGCCGTCGTTGCAAGGCGACAACGCCGTCGAACCGGAGGCTGGGCCGACGCAGGAGGTCGGGCGCGTCTATCCGTCCGATGCCTCTCCCCAAGTGGCGTCGCTCGCTATCGCCGGAGCGTCGACCGGCAGTCCTCTTCTCGGAGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1c5da702bb3f98ce0e77c29abeafacff95789eb0bb21b2b24314f7317f4e650b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7724
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization and comparative genomics of Xanthomonas oryzae pv. oryzae bacteriophages Varga,I., Molnar,J., Gazdag,A., Szucs,D., Doffkay,Z., Valappil,S.K., Papp,S., Pinter,R., Vera Cruz,C.M., Ricardo,O., Vizi,T., Schneider,G., Rakhely,G. and Kovacs,T. 2019-07-03 — GenBank