Protein

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Genbank accession
UGV23773.1 [GenBank]
Protein name
tailspike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MATQPTNLPVPSESPRDLKFNAGKIDEFVTSRELKYIDRFGGEHYTIEGISKLSKEAISSFGYITMDSFEDGNTLTLPNQVLRLEATGEYYRWDGAFPKVVPAASTPESTGGIGIGKWLSVGDATLRGELSSKDGYSLVGELKSVADFYGMTGDTGKKVHLKGWYSGNTSGSGEFYFDSAIPKSKHDGGKYISPTVPYTTAKDFVSGLGETNPAGSGVWVRSDVVSELRGEWYGMISGIDVTVMSQKMADTAGVEGYGLVWPAGSLLLSGTVTVKCDNSANGQVKFLRGHSKRGTIFIIDVITTPSVIGMLLYGSIGTANQTQDMVVIEGFSFLGNGATPSLTDKTGTGLYIQNVNGLRMVDVDCKNLDRGCIIQNSLYIYIGSSRFESSQTGMLCRRNGLVTGANAVEIVNCAFTDNILYGLQCIESHAFRLSNCAFEGNGRTTFHGAPSTGVAAVQFSEGGVAGGNIAVFDTCDFEANLMPDIKYLSSTNRVQMVTVRNTVFSNTRDNVTSPHVMLQTTSTGLSTGKYILEMQGNTFYNGKPDEPTPRTNVIINGFASLGYGHASFLDYDNSFYGAINIEKIVAYKKSPDDGFICRGLSAGGFTASASRNVISCTRQGTGVYRVITNQLTTSFSFSIQLDNSGFATFSASENNEALTVSIFDANGAPADRSFRMIGKLI
Physico‐chemical
properties
protein length:681 AA
molecular weight: 73071,21270 Da
isoelectric point:5,55376
aromaticity:0,09838
hydropathy:-0,13084

Domains

Domains [InterPro]
DC_1559
ATT
1–179
DC_1559 IPR011050
IPR040775
RBD
57–123
IPR040775
G3DSA:2.10.10.80
ATT
62–133
G3DSA:2.10.10.80
UGV23773.1
1 681
Architecture
ATT
STR
ATT 1-179 | STR 324-554 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UGV23773.1
1 681
Domain Start End Length (AA) Confidence
N-terminal 1 241 241 0,9938
Central domain 242 581 341 0,9920
C-terminal 582 681 99 0,9603
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-241
Central
242-581
C-terminal
582-681

Taxonomy

  Name Taxonomy ID Lineage
Phage Hafnia phage Pocitis76
[NCBI] 		2900313 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Hafnia sp.
[NCBI] 		1873498 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UGV23773.1 [NCBI]
Genbank nucleotide accession
OL512804 [NCBI]
CDS location
range 17940 -> 19985
strand +
CDS
ATGGCTACCCAACCAACAAATCTGCCAGTACCAAGTGAATCTCCACGAGACCTGAAGTTTAACGCAGGGAAAATTGACGAGTTCGTAACATCACGCGAGTTAAAATATATAGACCGTTTTGGTGGAGAGCATTACACCATTGAGGGCATTAGCAAACTGTCAAAAGAAGCCATCTCTTCATTTGGCTACATCACAATGGACTCATTCGAAGACGGCAATACGTTAACGCTGCCGAACCAAGTTCTGCGTCTTGAGGCTACAGGCGAGTATTACCGCTGGGACGGTGCATTCCCGAAAGTAGTTCCCGCTGCATCAACCCCTGAATCAACAGGTGGCATCGGTATTGGTAAATGGCTTAGCGTGGGTGATGCGACACTTAGAGGGGAGCTTTCATCTAAAGATGGTTATTCTCTCGTCGGTGAATTGAAATCAGTAGCAGATTTTTATGGGATGACAGGTGATACTGGTAAAAAAGTACATCTAAAGGGCTGGTACTCAGGAAACACAAGTGGATCTGGTGAATTCTATTTTGACTCGGCAATCCCAAAATCAAAACATGATGGCGGTAAATATATAAGCCCAACAGTTCCTTACACTACGGCTAAAGACTTTGTTTCAGGATTAGGGGAAACAAACCCAGCAGGATCAGGTGTGTGGGTTAGATCCGATGTTGTTAGTGAGTTGCGCGGAGAGTGGTATGGGATGATCAGCGGAATTGACGTGACAGTTATGTCACAGAAAATGGCTGATACAGCAGGGGTGGAAGGATACGGCCTTGTGTGGCCTGCTGGTAGCTTACTCCTTTCTGGAACCGTTACTGTTAAATGCGATAATTCAGCTAATGGTCAGGTTAAGTTTCTGCGCGGTCATAGTAAACGCGGGACCATTTTTATAATTGACGTTATTACAACCCCTTCTGTTATTGGAATGTTGCTATATGGGAGTATTGGCACTGCAAATCAAACTCAAGACATGGTTGTTATTGAGGGTTTTTCATTTCTAGGAAATGGGGCAACTCCATCATTAACAGACAAAACCGGGACTGGGCTATACATTCAAAATGTCAATGGTCTTAGAATGGTAGATGTTGATTGTAAAAACCTTGATAGAGGCTGCATCATTCAAAATAGCCTATACATATATATTGGGTCATCTAGATTTGAGTCAAGCCAGACTGGGATGTTGTGCCGTAGGAATGGGTTGGTTACTGGCGCAAATGCGGTGGAGATTGTTAATTGCGCTTTTACTGACAACATATTATATGGATTGCAGTGCATTGAAAGCCACGCATTCAGGCTTTCAAACTGCGCGTTTGAGGGCAATGGCAGAACAACATTTCATGGGGCGCCGTCAACAGGGGTTGCTGCCGTGCAGTTTTCTGAAGGCGGTGTAGCTGGTGGAAATATCGCTGTGTTTGATACTTGTGATTTCGAAGCAAACCTTATGCCTGATATTAAATATCTCAGCAGCACAAACCGCGTTCAGATGGTTACAGTTAGAAATACTGTATTCTCAAACACTCGAGACAACGTCACAAGTCCACATGTTATGCTTCAGACTACTTCAACAGGTCTTAGCACTGGAAAGTATATTCTGGAAATGCAGGGCAATACTTTCTACAACGGTAAGCCTGATGAACCAACACCAAGGACAAACGTAATTATAAATGGATTTGCATCACTTGGGTATGGTCATGCTAGTTTCTTAGATTATGACAATTCATTTTATGGTGCCATTAATATCGAAAAGATTGTTGCATATAAAAAATCACCCGATGATGGTTTTATCTGCCGTGGGCTTTCTGCTGGTGGATTTACTGCTTCGGCATCACGCAATGTGATAAGCTGCACGAGACAAGGTACAGGTGTGTATAGAGTTATCACAAACCAACTGACAACATCATTCTCTTTTTCCATTCAATTAGACAATTCTGGGTTTGCTACGTTTAGTGCATCAGAAAATAATGAGGCTTTAACTGTGAGTATTTTTGATGCAAATGGAGCTCCAGCAGACAGAAGCTTTAGGATGATTGGCAAATTAATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
eb680cc24967ef6fb069d87b06434de5ee7aa69f3ab31694f73b1cb982602b6c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8313
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Hafnia phage Pocitis76 Dislers,A., Zrelovs,N. and Kazaks,A. 2012-10-15 — GenBank