Protein

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Genbank accession
WPK32980.1 [GenBank]
Protein name
non-contractile tail tubular protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,55
Protein sequence
MAQSLEGTIQSLLQGVSQQIPRERQPGQLGAQLNMLSDPVSGIRRRPPAEIVWESSIDNPDLDSLYTEYVERGSDGRHLLINTSNGNWWLLSKDGKSIVNSGNDPYFVTTVGQTSIQTASIAGLTYILNTEMAPNATVDNTGRIDPSTTGFFYIKTVAFQKRWEVTVSWTGGSVSGYYNAPDASHSESAEWVSASYVVRALIDGDPNGQGIGSAITAAGGSISRFEGYMYISGLPNLVVSTSAGDTYAVASGQSRVHQEQDLPAQLPAQAHGTMCQVGTASAETAWYQFDYNSRTWSEVGAYGSISKITNMPRELASDDNIIAREWEGRLAGNDENNQDPGFIENGYITGIAAFQGRLVLLSGSVVDMSASGLYQRFYRSTVTSLLDTDRISISSASAQDSVYRTAIQFNRDLVLFANSMQAVVPGSVVLTPTNASISITSTYECDSRVTPVMAGQTVIYPNKRNNSYAGILELIPSPYTASQYTTQDATVHLPRYIPGRVLQMQNSSVTNMAFVRMSGQRKSLLVYEFMWGGQDGGKVQAAWHQWTFPYNILSVQALEDEVFLYLQGPSPGNKLLILSMDPREGYNLGMEYTNAYSDLQTQVTVSGGVLEVPAVLRPVGWADTYKEDLILTYPANSPMGPTEVGLKDIAGTNQLSVVRGVPDGQYILGRRYNSAFTLTTPVLRDQNDKLVGSGHVRLLRLDVAVRNSGHFDVHVTDTPRDVDWSGELTGILMNSKELTLGQTLRMDLATITVPCRTNADTTEITLYTKGSQELNVLDISYILRYNQRRRRI
Physico‐chemical
properties
protein length:792 AA
molecular weight: 86722,02400 Da
isoelectric point:5,08149
aromaticity:0,08586
hydropathy:-0,25227

Domains

Domains [InterPro]
DC_0058
STR
1–792
DC_0058
IPR058003
TTP
4–792
IPR058003
WPK32980.1
1 792
Architecture
STR
STR 1-792
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK32980.1
1 792
Domain Start End Length (AA) Confidence
N-terminal 1 145 145 0,9919
Central domain 146 344 200 0,3745
C-terminal 345 792 447 0,1748
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-145
Central
146-344
C-terminal
345-792

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage AV102
[NCBI] 		3077248 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK32980.1 [NCBI]
Genbank nucleotide accession
OR352933 [NCBI]
CDS location
range 15251 -> 17629
strand -
CDS
ATGGCCCAGTCCCTAGAGGGTACCATTCAGAGTTTGCTCCAGGGCGTGTCCCAGCAGATTCCAAGAGAGCGCCAGCCTGGGCAACTTGGGGCGCAACTGAACATGCTCAGTGACCCGGTATCCGGAATACGTAGACGACCCCCAGCAGAGATTGTATGGGAGAGTAGTATTGACAATCCGGACCTAGACTCCCTGTATACAGAATACGTTGAGCGTGGTTCCGACGGTAGGCACCTGCTGATTAACACCAGTAACGGTAATTGGTGGCTATTGTCCAAGGACGGTAAATCTATTGTAAACAGCGGGAACGACCCGTACTTCGTAACAACGGTAGGTCAAACCTCTATCCAGACTGCGAGCATTGCTGGGTTGACCTACATCCTGAATACGGAGATGGCCCCAAATGCGACCGTGGACAACACCGGTCGAATTGACCCGAGCACCACGGGATTCTTCTACATCAAGACAGTGGCCTTCCAGAAGCGCTGGGAGGTTACTGTATCCTGGACAGGTGGTTCCGTATCAGGTTATTACAATGCCCCTGATGCAAGTCACAGCGAATCCGCAGAGTGGGTTTCCGCGTCGTATGTAGTTAGGGCCTTAATCGACGGAGATCCTAATGGTCAGGGTATAGGCTCAGCTATTACGGCGGCTGGTGGAAGTATAAGCCGTTTTGAGGGGTATATGTATATATCCGGGCTGCCCAATCTCGTAGTTAGTACGTCTGCTGGAGACACCTACGCCGTGGCATCTGGGCAGAGTAGGGTTCATCAAGAACAGGACCTACCTGCACAGCTACCAGCACAGGCTCACGGTACGATGTGCCAAGTGGGTACAGCTTCAGCTGAGACAGCGTGGTATCAGTTCGACTATAATTCCCGCACCTGGTCTGAAGTTGGAGCCTATGGTAGCATCTCCAAAATTACTAACATGCCCAGGGAGTTGGCATCAGATGATAACATCATTGCCCGTGAATGGGAGGGGCGTCTTGCTGGGAACGACGAAAACAATCAGGATCCTGGGTTTATTGAGAATGGTTACATTACAGGTATAGCAGCATTCCAGGGCCGTCTGGTGCTGCTTAGTGGTAGTGTAGTGGACATGTCAGCCTCTGGGCTGTATCAGCGATTCTATCGCTCTACAGTAACTTCTCTGCTGGATACAGACCGTATCAGCATTAGCTCGGCATCTGCTCAGGATTCCGTGTACCGTACAGCTATACAATTCAACCGAGACTTGGTTCTGTTTGCAAATAGCATGCAGGCTGTAGTGCCTGGGTCAGTAGTGCTTACTCCAACTAACGCCAGTATTAGCATCACTAGCACCTACGAATGTGACAGCCGAGTAACGCCAGTAATGGCTGGGCAGACTGTGATTTACCCAAACAAGCGCAACAACAGCTATGCGGGTATTCTGGAGCTTATCCCATCCCCGTATACTGCCTCACAATATACTACGCAGGATGCGACTGTGCACCTCCCTCGGTATATCCCTGGGAGGGTGCTGCAGATGCAAAACTCCAGTGTCACTAATATGGCGTTTGTGCGTATGTCCGGACAGCGCAAGAGTCTGCTGGTATATGAGTTCATGTGGGGTGGACAGGATGGCGGTAAGGTGCAAGCAGCCTGGCACCAGTGGACATTCCCGTATAATATCCTGAGCGTGCAGGCGCTCGAAGATGAGGTGTTCCTGTACCTACAAGGGCCAAGCCCTGGCAATAAACTCCTGATTCTGTCTATGGACCCACGCGAAGGATACAACCTCGGCATGGAGTACACTAACGCCTACTCGGACTTGCAGACACAAGTTACCGTAAGCGGAGGGGTGCTAGAGGTGCCCGCAGTGCTGCGCCCGGTGGGTTGGGCAGATACGTACAAAGAGGACCTAATCCTCACGTATCCAGCCAACAGTCCTATGGGACCTACTGAGGTGGGTCTCAAGGATATTGCCGGTACAAACCAGCTCAGTGTAGTGCGGGGTGTTCCTGATGGGCAGTATATCCTGGGTCGCAGGTACAATAGCGCATTCACTCTGACTACCCCAGTACTTCGGGATCAGAATGATAAGCTAGTTGGTAGTGGGCACGTGCGTTTGTTGCGTCTGGATGTAGCTGTACGTAACTCTGGGCACTTTGATGTTCATGTAACTGATACACCTCGGGATGTTGACTGGAGTGGAGAACTCACAGGTATCTTGATGAACTCCAAGGAGCTGACGTTGGGGCAGACCTTGCGTATGGACTTGGCTACCATCACAGTCCCGTGCCGTACTAACGCGGACACTACCGAAATCACTTTGTATACAAAAGGCTCTCAGGAGCTGAATGTGCTGGATATCTCTTATATCCTGCGCTACAACCAACGCAGACGGAGGATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a6017385141c51f722a19b2b2680682938b66ea9b047c8feb0f34c58c4e5f983
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3310
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A collection of diverse bacteriophages for biocontrol of ESBL- and AmpC-beta-lactamase-producing E. coli Vitt,A.R., Sorensen,A.N., Bojer,M.S., Bortolaia,V., Sorensen,M.C.H. and Brondsted,L. 2023 — GenBank