Protein

View in Explore
Genbank accession
YP_009802301.1 [GenBank]
Protein name
receptor binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSFFAGRIGTKTVLSLNTASGGDVNIHNTPNGNTIFHSDMPHLFVKTRYTVNLGAGGDGYFIGTLPTELRTILANRANVVIPVLVCKNSGGTEYYHQMFGMARASSYLWHDLDLIGVSCLYGGSLSFDLNLEWGYYTAASGVTVADRIGVAGTGGYTIFNVEAGEDYDPAYAFDIASGATITGVWSQYPYKRTPNRNWLPRGSNPYTGNIRDMEKNFLINPDYMYPLGPSSSTYDTVFVRAGGARNLTGIKNTYAGTTASSVRNIDYYANSIPDLYASVPMSKFVRAGIERHVRNGLISGFTEATYAGMTPVRMEYLVLNVTFSNTGGYTAQNLFTGSDIKVSRTDFNIKGVNLRSTSYEMLSAVSTGTPSISNTYFCSNTQASSATALPDGGAFRFYGTTGSGGSGSWAASNVETSIGSTTQWNIGLYKFPTNSSIAINSSGPKISINNVDIWSPTVRPLQLFTGNKASNVIIGDNEWLHEIATGGTKMISSVGMGLPASGTTVVLMSIEWMGNDLCSPNGDPSMGYLWSLNSSIYSPAGVSKRLTKFDYDKGDAVSHQIIVLNPNVYVPIYVENAFSYSGASSSSGGKPKSRFQYYIRKNGSTGNLEFWGTSRATPLTVGGVSTGKPPYIQFPKLRLNIQRLT
Physico‐chemical
properties
protein length:645 AA
molecular weight: 69520,17360 Da
isoelectric point:8,89672
aromaticity:0,11473
hydropathy:-0,16140

Domains

Domains [InterPro]
IPR059609
RBD
1–645
IPR059609
YP_009802301.1
1 645
Architecture
RBD
RBD 1-645
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009802301.1
1 645
Domain Start End Length (AA) Confidence
N-terminal 1 131 131 0,0002
Central domain 132 463 333 0,8877
C-terminal 464 645 181 0,9673
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-131
Central
132-463
C-terminal
464-645

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Gostya9
[NCBI] 		2182345 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus gostya9
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009802301.1 [NCBI]
Genbank nucleotide accession
NC_047979 [NCBI]
CDS location
range 98761 -> 100698
strand -
CDS
ATGAGCTTCTTTGCCGGAAGAATAGGAACGAAAACTGTCCTTTCCCTCAATACGGCTTCTGGGGGAGATGTTAACATACATAACACGCCAAACGGGAATACTATATTTCACTCAGACATGCCACATCTTTTCGTGAAGACACGTTATACGGTAAACTTAGGTGCTGGTGGTGATGGTTACTTCATTGGTACACTTCCAACCGAACTACGTACTATCCTGGCCAATAGAGCCAACGTTGTTATTCCTGTTTTAGTATGTAAGAACAGCGGTGGTACTGAATATTACCATCAGATGTTTGGGATGGCCAGAGCTTCTAGCTACCTTTGGCATGACTTAGATTTAATAGGTGTGTCCTGTCTATATGGTGGGTCTTTATCCTTTGATCTCAACTTAGAATGGGGGTACTATACGGCTGCTTCGGGAGTTACTGTAGCAGATAGAATTGGTGTGGCAGGTACTGGTGGCTATACTATATTTAATGTTGAGGCTGGAGAGGATTATGACCCAGCGTATGCTTTTGATATAGCTTCGGGGGCTACTATTACTGGTGTATGGTCTCAATACCCGTATAAAAGGACACCTAATAGGAATTGGCTTCCTAGAGGCAGTAATCCATACACAGGAAATATTCGTGATATGGAAAAAAACTTTCTGATAAACCCAGATTATATGTATCCCCTAGGCCCATCTAGTAGCACCTATGATACTGTATTCGTTAGGGCAGGTGGGGCCAGAAATCTAACAGGGATAAAAAATACATATGCAGGTACTACAGCCTCATCTGTTAGGAATATAGATTATTACGCTAATAGTATTCCAGATTTATATGCTTCTGTACCTATGTCTAAATTTGTTCGTGCTGGGATTGAACGCCATGTTAGGAATGGATTAATTTCTGGGTTTACTGAAGCTACCTACGCTGGGATGACCCCTGTACGTATGGAATACCTAGTTCTAAACGTAACATTCAGTAATACTGGTGGATATACAGCTCAAAACCTTTTTACGGGTAGTGATATAAAAGTTAGTAGGACTGACTTTAATATAAAAGGTGTCAATTTGCGCAGCACATCCTATGAAATGTTATCAGCGGTTAGTACAGGTACTCCTAGTATAAGCAATACCTACTTTTGCAGTAATACTCAGGCATCTTCTGCCACTGCGTTACCGGATGGGGGCGCTTTCAGGTTTTATGGTACTACCGGATCCGGAGGTTCAGGTAGCTGGGCAGCTTCAAACGTTGAAACTTCCATAGGTTCTACAACACAATGGAATATTGGGCTTTACAAATTCCCCACCAATAGCAGTATTGCTATTAATAGCTCGGGTCCTAAAATCTCTATAAATAATGTAGATATTTGGAGTCCTACAGTTAGGCCTCTACAGCTCTTTACTGGTAATAAGGCTAGTAATGTAATTATAGGAGATAACGAGTGGCTACACGAGATAGCCACTGGTGGTACAAAAATGATTAGTAGTGTTGGGATGGGATTACCGGCATCTGGTACTACAGTAGTGCTTATGAGCATAGAATGGATGGGAAATGACCTATGCTCCCCTAATGGAGATCCTTCAATGGGTTATCTCTGGAGTTTAAATAGCTCTATATACAGTCCGGCAGGGGTTAGCAAAAGATTAACCAAATTTGACTATGATAAAGGTGATGCTGTATCTCACCAAATAATAGTTTTAAACCCTAACGTCTACGTTCCTATCTATGTGGAAAATGCTTTTAGCTACTCAGGGGCTTCTAGCTCTAGTGGTGGTAAACCAAAGAGCAGGTTCCAATACTATATAAGGAAGAATGGCAGTACTGGTAATCTGGAGTTCTGGGGAACTTCTCGTGCTACTCCTCTAACGGTTGGTGGAGTTTCCACAGGCAAACCGCCGTACATCCAATTTCCTAAGCTAAGATTAAATATACAGAGGTTAACATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9bd595917febff8e82e0b1a4bd6896d0c870b374475122d723552a60f50f6ff5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3270
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Looking for novel host receptors of T5-like bacteriophages Kulikov,E.E., Letarov,A.V. and Golomidova,A.K. 2019-11 — GenBank