Protein

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Genbank accession
YP_008873193.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,91
Protein sequence
MLCYGQAVSRTTYAGLFAVIGITYGAGDGSTTFNLPDLRGRVPAGVDNMGGTAAGRLTTAAGGVNAAVLGAVGGASTHTLTAAQMPGHTHAGTTAAGGAHKHNIPAKNSDGSGTNDTTTLMYGTTKTESTFTYMATAAAHTHTFTTDSAGGGAAHPVVQPTMALNHIIRI
Physico‐chemical
properties
protein length:170 AA
molecular weight: 16902,64210 Da
isoelectric point:8,00847
aromaticity:0,05294
hydropathy:-0,00235

Domains

Domains [InterPro]
IPR037053
ATT
1–39
IPR037053
IPR011083
ATT
1–43
IPR011083
DC_1651
STR
1–170
DC_1651
SSF88874
STR
2–170
SSF88874
YP_008873193.1
1 170
Architecture
ATT
STR
ATT 1-43 | STR 44-170
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PPpW-3
[NCBI] 		1279082 Uroviricota > Caudoviricetes > Hiroshimavirus >
Host Pseudomonas plecoglossicida
[NCBI] 		70775 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008873193.1 [NCBI]
Genbank nucleotide accession
NC_023006 [NCBI]
CDS location
range 13513 -> 14025
strand +
CDS
TTGCTGTGCTACGGCCAGGCCGTCAGCCGAACCACCTATGCCGGCCTTTTTGCCGTTATTGGTATCACCTACGGCGCAGGCGACGGCAGCACCACTTTCAACCTTCCAGACCTGCGTGGCCGCGTTCCGGCTGGTGTGGACAACATGGGCGGCACCGCAGCTGGGCGCCTGACCACTGCTGCTGGTGGAGTCAACGCAGCCGTCCTGGGCGCGGTTGGTGGCGCATCCACCCACACCCTGACCGCTGCGCAGATGCCTGGCCACACCCACGCCGGCACGACAGCCGCAGGCGGCGCCCACAAGCACAACATTCCGGCGAAGAACTCCGATGGTAGCGGAACCAACGACACCACCACCCTTATGTACGGCACGACCAAGACGGAAAGCACTTTTACGTACATGGCTACCGCTGCCGCGCACACGCACACATTCACGACTGACAGCGCAGGCGGTGGTGCGGCGCACCCAGTCGTTCAGCCGACCATGGCCCTGAACCACATCATCCGCATCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
edc69651184dd224b39e0fbebd3daa5db0c9e4d30155bb6d679130a6b96d909a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7796
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence Analysis of Two Pseudomonas plecoglossicida Phages, Potential Therapeutic Agents Kawato,Y., Yasuike,M., Nakamura,Y., Shigenobu,Y., Fujiwara,A., Sano,M. and Nakai,T. 2015 — GenBank