Protein

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Genbank accession
YP_007672920.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MELGGSAVLVDVILVEGTDKQAFVDSFDENKAEWWNMLPSMPSLLVMLVEGDFIETLVADPRVVSADEVPQSFPCTLPDKESMSKRFTSSTSSSYRAASGLGEDNSGLQFYLDTQHIVATDPGGAVQKIGREVGTTNGDDAYFVDGTYTSRWTGKNVDIVTLESGSSGDWSTHQGLHDQHPDFQKLSSEDDSHSRVDPYWYQCTAHPNMKNTISINPADGTREEYSIAVSFGGSGIYTLTGTDRNGSVGGSNPPLVFQEGDTVTFTITASTHPFEIRVGDGGSAVNDGSVDNNGSDSGDVVWNLRTASRFTPMDWPDLEAAANNQVTSQDGGNSGLTNHGIGVLSVSGGTICGFAKKANLYAMYLVTGDSPTECIQALIDWHNAKPSNPETGEKNPTIMIAEYQYLQDRKRAIPVDYVDKIVTPNGTVNRPGGGSWGSDLSEFVKANIIPFKVYDATNGTRWCVVMPNQSSYSSLHTALETAWNSGIICVNAAGNNGGTYAKRDDAQDVYITVDAATPYDITFISYGNDNSASTSSTTTWYPHIPYGPHGTNNNIDVAAGYNSEAMPGWDGYSNRGPGITVTGLGANTYSSYQSSTYGSYKWGMFSGTSCATPTVVGKIACLMEKYKHYNGSWPNPSVTKQLLVRSAKNVVRSIPSGGTSFSWTNVPSAGGASLSNAISFGNCYIGGGGGNGGYTYTEAAGTPGLRAFFDEPDFSGHKLKLKGRRPVEGATYPRTPNSIGRSTTTYPELNV
Physico‐chemical
properties
protein length:751 AA
molecular weight: 80267,24410 Da
isoelectric point:4,85117
aromaticity:0,09720
hydropathy:-0,41438

Domains

Domains [InterPro]
DC_1785
ATT
1–141
DC_1785 IPR036852
IPR036852
STR
280–669
IPR036852
IPR036852
STR
280–660
IPR036852 DC_1865
IPR000209
ENZ
468–650
IPR000209
IPR023828
Unmapped
607–617
IPR023828
YP_007672920.1
1 751
Architecture
ATT
STR
RBD
ATT 1-141 | STR 142-669 | RBD 670-751
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007672920.1
1 751
Domain Start End Length (AA) Confidence
N-terminal 1 100 100 0,6577
Central domain 101 332 233 0,8290
C-terminal 333 751 418 0,4140
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-100
Central
101-332
C-terminal
333-751

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-CAM1
[NCBI] 		754037 Uroviricota > Caudoviricetes > Pantevenvirales > Anaposvirus > Anaposvirus socalone
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007672920.1 [NCBI]
Genbank nucleotide accession
NC_020837.1 [NCBI]
CDS location
range 1658 -> 3913
strand -
CDS
ATGGAACTGGGCGGTTCAGCGGTATTAGTAGATGTCATTCTTGTCGAAGGAACTGACAAGCAAGCGTTTGTAGATAGTTTTGATGAGAATAAAGCAGAGTGGTGGAATATGCTTCCATCCATGCCCTCTTTGCTCGTCATGCTTGTCGAAGGAGATTTTATTGAAACTCTAGTAGCAGACCCCAGAGTTGTTTCTGCAGATGAAGTTCCACAGTCATTTCCATGTACTCTCCCAGATAAAGAGAGTATGTCAAAAAGATTTACTTCTTCCACGAGTTCATCTTATAGAGCAGCATCTGGACTAGGAGAAGATAATTCTGGTCTCCAGTTTTACTTGGACACACAACATATTGTTGCGACAGATCCTGGCGGCGCAGTTCAAAAAATTGGTAGAGAAGTTGGTACTACCAATGGCGATGACGCATATTTTGTTGATGGCACTTATACTTCCAGATGGACTGGAAAGAATGTTGATATCGTCACTCTAGAATCTGGTAGTAGTGGAGATTGGTCTACTCATCAGGGTTTGCATGATCAGCACCCAGACTTTCAAAAGTTATCAAGTGAAGATGATTCTCATTCAAGGGTAGATCCTTATTGGTATCAGTGTACAGCACACCCCAACATGAAAAACACCATCAGCATTAATCCTGCTGATGGCACTAGAGAAGAATATAGCATTGCTGTAAGTTTTGGTGGTTCTGGTATCTACACTTTAACTGGAACGGATAGAAATGGATCTGTTGGTGGAAGCAATCCTCCACTAGTATTTCAAGAAGGAGATACTGTTACATTCACCATAACTGCTTCTACTCACCCATTTGAGATTAGAGTTGGTGATGGTGGAAGTGCAGTAAATGATGGCAGTGTAGATAATAATGGTAGTGATTCTGGAGATGTTGTCTGGAATTTAAGAACAGCATCTAGATTTACTCCAATGGATTGGCCAGATCTAGAAGCAGCTGCTAACAATCAGGTAACATCCCAAGATGGTGGCAACAGTGGACTAACCAATCATGGCATTGGTGTATTGAGTGTTTCTGGTGGTACTATTTGTGGATTTGCAAAGAAAGCAAATCTCTATGCAATGTACCTAGTTACTGGCGACAGTCCAACAGAGTGTATTCAGGCATTGATTGATTGGCACAACGCCAAACCATCTAATCCAGAAACTGGAGAGAAAAACCCCACTATCATGATTGCAGAATATCAGTATCTGCAAGACAGGAAACGTGCAATTCCAGTAGATTATGTTGATAAGATTGTCACTCCAAATGGAACTGTCAATAGACCTGGTGGTGGTTCTTGGGGATCTGATTTGTCGGAATTTGTGAAGGCAAATATTATTCCATTCAAAGTCTACGATGCAACTAACGGCACCAGATGGTGTGTCGTGATGCCTAACCAGAGTTCATATAGTTCTCTGCACACTGCATTAGAAACCGCTTGGAATAGTGGTATCATATGTGTCAATGCTGCTGGTAATAATGGAGGAACATACGCGAAGAGAGATGATGCTCAAGATGTGTATATCACTGTAGATGCAGCAACGCCATATGATATTACATTCATCAGTTATGGGAATGACAATAGTGCTTCTACATCTAGCACAACTACTTGGTATCCTCACATACCATATGGTCCCCATGGAACTAATAACAATATTGATGTAGCAGCAGGATACAACTCGGAAGCAATGCCTGGTTGGGATGGATATTCAAACCGTGGACCTGGTATTACTGTTACAGGACTTGGAGCAAATACTTATAGTTCATATCAAAGTTCAACGTATGGATCTTATAAGTGGGGTATGTTCTCTGGGACAAGTTGTGCAACACCAACTGTTGTAGGAAAAATTGCCTGCCTGATGGAGAAATATAAGCATTACAACGGATCTTGGCCAAACCCAAGTGTAACCAAGCAATTATTGGTTAGGTCAGCAAAGAATGTAGTTCGTAGTATTCCTTCAGGTGGAACTAGTTTCTCTTGGACTAATGTTCCTAGTGCTGGTGGTGCATCTTTATCCAACGCAATCTCTTTTGGTAACTGCTACATTGGTGGTGGCGGTGGAAACGGTGGTTACACATATACAGAGGCAGCAGGAACACCTGGACTCCGAGCATTCTTTGATGAACCAGATTTCTCTGGTCATAAATTAAAACTTAAAGGTAGAAGACCAGTTGAGGGAGCAACATATCCTAGAACACCAAATTCAATCGGAAGAAGCACCACAACCTACCCAGAATTGAACGTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
898ea81ed17e033ae7d5c30c1ff0c42d2bc18b3332c3b042237c072bb60aa961
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5139
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-CAM1 0208SB26 Henn,M.R., Martiny,J., Weihe,C., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank