Protein

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Genbank accession
ADD65705.1 [GenBank]
Protein name
gp4 phage minor structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MFHVFDRWGNPKPAPMTVLAARRTQNVDGTDNLDLLSDLDLEKGDRVAWRDHMGLWREWLVNSIDTSRSDRLPLSTAHCVDAIQELASTYIEDKRNRTATASACAEKALAGTRWILGTVHDGTKTTEADLAFYHTNALSAIQDICATFGLEAVTTYQPDATGTRIATRTLSLVSRRGAATPTKRFTYGKDLASIRRTIDATQVATRLYGWGKGVATTDDDGEETGGYSRKISFADINDGKAYVEDATALALWGIPGPNGTRIHSEADAEFPDCEDPKQLLTLTKEALKTRSQPVVSYECDVTSLAAAGVNAEGTDIGDTVHIIDTSFPTPLRLEGRILQIEQDLTGDQTATTITLGNITTGITHQDDAWRRQLDQLISNSGAWNDAATGTKPYITDLINRINQIMNTTGGYTYLKPGQGIYVYDKPEDQNPTQCIHIGGGYWRIANSKKANGDWDFRALADGNGIYANTIYTGKLSDAAGHNQWNLDTGELTTRGMTATSITAEGTFACGSKDWYGIELNSIGQLAGYRKGKKVGYIDYSGGMYEVSNPSKVYYGLQLQGGCLRISTPILSVAKTTDTHVTTTHAYNGKHHYISKITSSSDGTITWYQSTTEYINGMCIN
Physico‐chemical
properties
protein length:620 AA
molecular weight: 67710,49940 Da
isoelectric point:5,50977
aromaticity:0,08226
hydropathy:-0,43984

Domains

Domains [InterPro]
IPR007119
Unmapped
65–345
IPR007119
DC_0904
STR
65–620
DC_0904
IPR010572
ENZ
87–363
IPR010572
ADD65705.1
1 620
Architecture
STR
STR 65-620
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ADD65705.1
1 620
Domain Start End Length (AA) Confidence
N-terminal 1 482 482 0,8492
Central domain 483 609 128 0,4295
C-terminal 610 620 10 0,9890
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-482
Central
483-609
C-terminal
610-620

Taxonomy

  Name Taxonomy ID Lineage
Phage Bifidobacterium phage Bbif-1
[NCBI] 		743964 No lineage information
Host Bifidobacterium bifidum
[NCBI] 		1681 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > Bifidobacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ADD65705.1 [NCBI]
Genbank nucleotide accession
GQ141189 [NCBI]
CDS location
range 4989 -> 6851
strand -
CDS
ATGTTCCACGTCTTCGACCGGTGGGGCAACCCGAAACCCGCCCCCATGACCGTCCTCGCCGCCCGGCGCACGCAGAACGTGGACGGCACCGACAACCTCGACCTGCTCAGCGACCTCGACCTCGAAAAAGGCGACCGAGTGGCATGGCGCGACCACATGGGCCTGTGGCGAGAATGGCTGGTCAACAGCATCGATACGTCACGCTCCGACCGGCTCCCCCTGTCCACCGCGCATTGCGTCGACGCCATCCAGGAACTCGCCTCCACATACATCGAGGACAAACGCAACCGGACGGCCACCGCCTCCGCATGCGCGGAAAAAGCGCTCGCCGGCACACGATGGATTCTCGGCACCGTGCACGACGGCACCAAAACCACCGAGGCAGACCTCGCGTTCTACCACACCAACGCGCTCTCCGCAATCCAGGACATCTGCGCCACGTTCGGACTCGAGGCCGTCACCACCTACCAGCCCGACGCGACGGGCACGCGCATCGCGACCCGCACCCTCAGCCTCGTCAGCCGGCGCGGCGCGGCCACCCCCACCAAACGCTTCACCTACGGCAAGGACCTCGCCTCGATCCGCCGCACCATCGACGCCACCCAGGTCGCCACACGCCTCTACGGATGGGGCAAAGGCGTCGCCACGACCGACGACGATGGGGAAGAGACCGGCGGGTACAGCCGCAAGATCAGCTTCGCCGACATCAACGACGGCAAGGCCTACGTCGAAGACGCCACGGCACTCGCCCTATGGGGCATCCCCGGCCCCAACGGAACCCGCATCCACAGCGAGGCAGACGCGGAATTCCCCGACTGCGAAGACCCCAAACAACTCCTGACGCTCACCAAGGAAGCGCTCAAGACACGCAGCCAGCCGGTCGTCTCATACGAATGCGACGTCACCAGCCTCGCCGCCGCCGGCGTCAACGCCGAAGGCACCGACATCGGCGACACCGTCCACATCATCGACACCAGCTTCCCCACGCCCCTGCGCCTCGAAGGACGCATCCTGCAGATCGAACAGGACCTCACCGGCGACCAGACCGCCACCACCATCACCCTCGGCAACATCACCACAGGCATCACCCACCAGGACGACGCATGGCGCCGACAACTCGACCAGCTCATCTCCAACTCCGGCGCATGGAACGACGCCGCCACCGGCACCAAACCATACATCACCGACCTCATCAACCGCATCAACCAGATCATGAACACGACCGGCGGCTACACATACCTCAAACCCGGCCAAGGCATCTACGTGTACGACAAGCCCGAAGACCAGAACCCCACCCAATGCATCCACATCGGAGGCGGATACTGGCGCATCGCCAACAGCAAGAAGGCGAACGGGGACTGGGACTTCCGCGCGCTCGCCGACGGCAACGGCATCTACGCCAACACCATATACACGGGCAAGCTCTCCGATGCCGCCGGCCACAACCAATGGAACCTCGACACCGGAGAACTCACCACCCGCGGCATGACCGCCACCAGCATCACCGCCGAAGGAACCTTCGCGTGCGGCAGCAAGGACTGGTACGGCATCGAGCTCAACAGCATCGGACAGCTCGCCGGCTACCGCAAGGGCAAGAAGGTCGGCTACATCGACTACTCGGGCGGCATGTACGAGGTATCCAACCCGTCGAAGGTCTACTACGGGCTCCAACTGCAAGGCGGATGCCTGCGCATCAGCACGCCCATCCTGTCCGTCGCCAAGACCACCGACACCCACGTCACCACCACACACGCCTACAACGGCAAACACCACTACATCTCCAAAATCACATCCTCCTCGGACGGCACCATCACCTGGTACCAATCAACGACCGAGTACATCAACGGAATGTGCATCAACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
9659272a9a120f5979cfccc440eef286ac289a976934c380f0fd7a60d86b14a7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7821
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50