Protein

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Genbank accession
WPK40708.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MPYTIKRYSSVNGGSSKPNKTVNDIQIDNTYSSIGLIGSYNESYKSQFFQNMLWKMENFSHTIAPLNPIEGQLWFNPDEKSVKVYISNDKPTSVSSDWKNLGSTILNELTDHESRTGINDPHETTKEQVGLGNVPNVYTFNKTLNLADVLDASICRSNLEVYGTSETYNKTTVNNLFMTKGGTVNNTDRLDGLTSADFVLVDNPVVYRTFDTTSIITNTALTYNNSKGSIVVNTGAGNIELLSGIRSDGRIASANDTGAMLSFINDNSDPIVTMVVFNRATANNQTAQPVKSYRFTKTNLIIDYDTNPSEMYHTGRIPSNAAVGSLPLNGKAVNTLLLNGIYQSSSPNDNAVVLRDGAGDVHVRHIQVSNPDENIETGNLILFRNSNTSDNYVRRANVSSFQSWFRANEPKGVVKAWIQFNGITGSTYKSHNCTLTKLGTGKYRIYYNSFSTPAVGSVVPFVGVTSDGQISTGMAAGTGRLSYNSSLVYLRSTTYTDLEFFRTYNINYNNYSLDSFTNVYADANNITFTWFF
Physico‐chemical
properties
protein length:532 AA
molecular weight: 58742,40550 Da
isoelectric point:6,19422
aromaticity:0,10526
hydropathy:-0,38308

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK40708.1
1 532
Domain Start End Length (AA) Confidence
N-terminal 1 291 291 0,7008
Central domain 292 490 200 0,1452
C-terminal 491 532 41 0,9840
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-291
Central
292-490
C-terminal
491-532

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Paride
[NCBI] 		3092178 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa PAO1
[NCBI] 		208964 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK40708.1 [NCBI]
Genbank nucleotide accession
OR805295.1 [NCBI]
CDS location
range 257375 -> 258973
strand -
CDS
ATGCCTTACACTATTAAACGTTATTCATCTGTCAACGGCGGCTCTTCTAAACCAAATAAAACCGTTAACGATATACAAATAGACAATACGTACTCTTCTATTGGACTAATAGGATCGTATAATGAATCTTACAAAAGTCAGTTCTTCCAAAATATGCTATGGAAGATGGAAAATTTTAGTCATACTATTGCTCCGTTAAATCCGATAGAAGGTCAATTATGGTTTAATCCAGATGAAAAAAGTGTTAAAGTTTACATAAGTAATGATAAACCTACGTCTGTTTCTTCCGATTGGAAAAATCTAGGATCTACTATTTTAAATGAGCTAACAGATCACGAATCAAGAACAGGTATTAACGATCCCCACGAGACAACAAAAGAACAAGTGGGATTGGGAAATGTTCCTAATGTTTACACATTCAATAAAACATTAAATCTTGCAGATGTATTAGATGCATCTATATGCAGATCTAATTTAGAAGTATACGGGACTTCAGAAACTTACAATAAAACTACTGTAAACAATCTTTTTATGACAAAAGGTGGTACAGTAAATAATACTGACAGATTAGATGGCTTAACTAGTGCTGATTTTGTCCTTGTAGACAACCCTGTTGTTTATAGAACATTTGATACAACTAGTATAATCACTAATACTGCGTTAACGTATAATAACTCTAAAGGTTCTATAGTAGTTAACACAGGTGCAGGAAATATAGAGTTGTTGTCCGGAATAAGATCAGACGGAAGAATTGCATCTGCAAACGATACCGGTGCTATGTTATCGTTTATTAACGATAATAGTGATCCTATAGTTACTATGGTTGTATTTAATCGTGCTACTGCAAACAATCAAACAGCACAACCAGTAAAATCATATAGATTTACAAAAACTAATTTAATAATAGACTACGATACTAATCCTAGTGAAATGTATCATACAGGAAGAATACCGTCTAACGCTGCTGTCGGCTCACTTCCACTAAACGGAAAGGCTGTCAATACATTATTATTAAATGGCATTTATCAATCTAGCAGTCCAAATGACAATGCAGTTGTATTAAGAGATGGTGCAGGAGATGTACATGTTAGACACATTCAAGTTTCTAATCCAGACGAAAATATAGAAACAGGAAATTTAATTCTATTTAGAAATTCAAATACAAGCGATAACTATGTTAGACGAGCAAATGTCTCTTCATTCCAGTCGTGGTTTAGGGCTAACGAACCGAAAGGTGTAGTTAAAGCTTGGATACAATTTAACGGAATAACAGGTTCTACTTATAAGTCACATAACTGTACACTAACTAAACTAGGTACAGGGAAATATAGAATATATTACAATTCATTTTCTACGCCTGCTGTGGGTTCTGTTGTTCCGTTTGTAGGAGTTACTAGTGACGGTCAAATATCTACCGGTATGGCTGCTGGCACTGGGAGACTTAGCTACAATTCATCATTGGTATATTTAAGAAGCACTACTTATACAGATTTAGAATTCTTCAGAACATACAATATTAATTATAATAACTATTCTTTAGATTCGTTTACTAATGTATACGCAGACGCTAACAACATAACATTTACATGGTTCTTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c225319ef2aa3e2b8de68a7a8b6d31bee5ecc992b5de9f214cb36311ef03c0af
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5757
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage Paride can kill dormant, antibiotic-tolerant cells Maffei,E., Harms,A. and Humolli,D. — — GenBank