Protein

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Genbank accession
XYH45432.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MATQRLATFAPNDVNVVITQRSSGIAHIVSGYSEDSIVNIERSAETFTMYTGADNTSTRIYNANKSATITLSLQQTSASNDILSLLYANDSTSRNSTGLFSLQISDASGRSRYFSDDSYVGVVPNSAFGNTMQTRDWVLHAHNLDTYIGGNAILSPEDQDVITTLGGSIDAKWIE
Physico‐chemical
properties
protein length:175 AA
molecular weight: 18929,50840 Da
isoelectric point:4,64559
aromaticity:0,08000
hydropathy:-0,23429

Domains

Domains [InterPro]
IPR021695
TAS
7–149
IPR021695
IPR021695
TAS
7–140
IPR021695
IPR021695
TAS
9–137
IPR021695
XYH45432.1
1 175
Architecture
TAS
TAS 7-149 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYH45432.1
1 175
Domain Start End Length (AA) Confidence
N-terminal 1 146 146 0,9267
Central domain 147 164 19 0,4973
C-terminal 165 175 10 0,7076
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-146
Central
147-164
C-terminal
165-175

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Bitten
[NCBI] 		3395524 Viruses >
Host Pseudomonas protegens
[NCBI] 		380021 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYH45432.1 [NCBI]
Genbank nucleotide accession
PV037721 [NCBI]
CDS location
range 81774 -> 82301
strand +
CDS
ATGGCTACTCAACGTCTTGCAACGTTCGCTCCAAATGATGTGAACGTCGTAATCACACAACGCTCTTCGGGTATTGCTCACATTGTGAGTGGTTACAGCGAAGATAGCATTGTCAACATCGAGCGTAGTGCTGAAACATTCACCATGTATACTGGTGCAGACAATACATCGACTCGTATTTACAATGCCAACAAAAGTGCAACAATCACTCTGAGTCTACAACAAACTTCTGCTTCGAATGATATCTTGTCCTTGCTATATGCAAACGACTCGACTTCCCGAAACAGCACTGGGCTGTTCTCTCTGCAAATCTCGGACGCCTCGGGCCGTAGCCGTTACTTCAGCGACGACTCGTATGTCGGTGTAGTTCCAAACTCCGCGTTTGGTAACACAATGCAAACACGGGACTGGGTACTACACGCTCATAACCTTGACACCTACATCGGCGGTAACGCTATTCTGTCTCCAGAAGATCAGGATGTCATTACAACGCTGGGTGGATCAATCGACGCTAAGTGGATTGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
311dd89f4c8cf76e11da0031465b828f55791054de30e60b5de050df6b15ff05
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7781
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50