Protein

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Genbank accession
YP_011898254.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,83
TF
Evidence RBPdetect2
Probability 0,70
Protein sequence
MDNIRIAILSANNTPVAFMDNAHKKSMHYWGDELHEYLQGTANTYTFTVNAKHPDAQHVKAGNKVAFTYKGKSYYLNIVNTDQTEQTITATAWSLSFELINEDAGEYKAGKAMSFEEYLAVFDAERTLKLGLNEVSDKRITNEWTGTTSVLKRLFSLANVFSAEIEFETVLNKDYSLKEIVLNVYREHSDTDSGVGEYRNDIVLRYGKGITGIRKTTDAEKLYTCIQPTGKDGLTINGLDKKEYDENRNIEYFTDGAIIRAPQARDRFPSNIVNKADAYILMRKEYDTDSKDKLYSMALSDLKTASEPVVTYEVDGYFDTNIGDTVRMQDQEWTPVLYLQARVSEQVRSLTNPKTAKTVFTNYKELTSEISDSLLQRMQDLINKNKVYTCSISTNNGIIFKNGIGSTTLTAYAYDNGVDVADKLQFRWSKDGREFYVGKSVTVNATDVDTKAVYSFEAMENGIKRGYYEVTITDVMDGEDGKDGEQGPQGEKGPQGATGATGPQGATGNGIKSITNYYLATASGSGVSASTSGWTTTVQAITASKKYLWNYEVVTYTNGSTYQSAPCIIGVYGDKGATGATGATGPSGIIVSSTAPSNPKVGQLWQTASGQPIKRWDGSRWVIHYISVDNLNAQTLSAIAADLGTVTAGLIKDKNGTMLIDVTSGKIISKKIVQGAVENVASLSNAYLAFSGKAPTTDLATMSVNLQNIMFTNENTRKATTIQFEDEMIYARNSVSPRISIYAYRNYDSGTVKGPYTSTNSANNIRVELKRRGCMVACKITMLAQFPNSGSFGAFDEVRIPIGYRPVLDIRTPYNEVSGSSIFGTGRYLISKDGGITIYVNNPNWTERHLSITWITDD
Physico‐chemical
properties
protein length:858 AA
molecular weight: 94524,61220 Da
isoelectric point:5,76486
aromaticity:0,09674
hydropathy:-0,40734

Domains

Domains [InterPro]
DC_0266
STR
1–789
DC_0266
IPR010572
ENZ
139–365
IPR010572 G3DSA:1.20.5.320
YP_011898254.1
1 858
Architecture
STR
STR 1-789 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_011898254.1
1 858
Domain Start End Length (AA) Confidence
N-terminal 1 681 681 0,8917
Central domain 682 847 167 0,2293
C-terminal 848 858 10 0,9984
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-681
Central
682-847
C-terminal
848-858

Taxonomy

  Name Taxonomy ID Lineage
Phage Ruminococcus phage phiRM10
[NCBI] 		2772516 Uroviricota > Caudoviricetes > Munstervirinae > Aceathervirus RM10 >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_011898254.1 [NCBI]
Genbank nucleotide accession
NC_104261.1 [NCBI]
CDS location
range 13302 -> 15878
strand +
CDS
ATGGATAACATCAGAATTGCGATTTTAAGTGCAAATAACACACCAGTAGCATTTATGGATAATGCACATAAAAAGTCCATGCACTACTGGGGAGATGAGCTGCACGAATACTTGCAGGGTACGGCGAATACTTACACTTTTACGGTAAATGCAAAGCATCCAGACGCGCAGCATGTCAAAGCTGGGAATAAGGTAGCATTTACTTACAAGGGGAAATCATACTACTTAAACATTGTAAATACAGACCAAACAGAGCAGACAATCACTGCCACGGCATGGTCGCTGTCGTTTGAGTTAATCAATGAGGATGCCGGAGAGTACAAAGCCGGAAAAGCAATGAGCTTTGAGGAGTACCTTGCCGTTTTTGATGCTGAGAGAACACTAAAACTGGGGCTCAATGAGGTATCAGACAAGCGAATCACCAACGAATGGACAGGTACAACGTCCGTATTAAAGAGATTGTTTTCTTTGGCTAATGTATTTTCGGCTGAAATCGAATTTGAGACTGTTTTAAATAAGGATTACTCTTTAAAAGAGATTGTCCTGAATGTCTACCGAGAACACTCCGACACAGACAGCGGAGTCGGAGAATACCGGAATGACATTGTACTGCGGTACGGGAAAGGAATTACCGGAATTCGAAAAACCACAGATGCCGAGAAGCTTTACACCTGTATCCAGCCGACCGGGAAAGACGGGCTGACGATCAATGGACTGGACAAAAAAGAATACGATGAGAACAGGAATATCGAGTACTTTACAGACGGCGCGATCATCCGTGCCCCACAGGCAAGGGACCGGTTCCCATCCAATATCGTAAATAAGGCTGATGCTTATATCCTGATGCGAAAAGAGTACGATACAGACAGCAAGGACAAGCTCTATAGCATGGCTCTGTCTGATCTTAAAACAGCATCCGAACCAGTAGTGACCTACGAGGTGGATGGATATTTTGACACCAACATCGGGGACACCGTGAGGATGCAGGATCAGGAGTGGACACCAGTGCTTTATCTACAGGCGAGAGTGTCCGAACAGGTGCGCAGTCTTACAAATCCAAAGACAGCAAAGACGGTATTTACAAACTATAAAGAGCTTACATCCGAAATTTCGGACAGCTTATTACAGAGGATGCAAGACCTTATTAATAAAAATAAGGTTTATACTTGCTCTATCTCAACAAACAACGGCATTATCTTTAAAAATGGCATCGGTAGCACTACTCTGACCGCTTACGCTTACGATAACGGCGTGGATGTTGCAGACAAGCTACAATTCCGATGGAGCAAGGATGGACGGGAGTTTTATGTTGGTAAGAGCGTTACGGTAAATGCTACGGACGTGGATACAAAGGCGGTGTACTCGTTTGAGGCTATGGAAAATGGGATAAAACGTGGGTATTACGAGGTTACGATTACAGATGTAATGGACGGAGAGGATGGAAAAGACGGAGAACAGGGTCCGCAAGGTGAGAAAGGACCGCAAGGGGCAACTGGCGCAACGGGGCCGCAAGGAGCAACTGGAAACGGAATAAAGTCTATCACGAATTATTATCTTGCAACGGCAAGCGGAAGTGGTGTGTCAGCGTCCACATCAGGATGGACTACAACTGTACAAGCAATAACGGCGTCAAAAAAATATCTGTGGAATTATGAAGTTGTTACCTATACAAATGGTAGCACGTATCAATCAGCACCATGTATCATCGGAGTATATGGTGATAAGGGAGCGACCGGTGCTACAGGAGCAACAGGACCAAGTGGCATAATTGTATCTTCTACGGCTCCGTCAAATCCTAAAGTTGGCCAGTTATGGCAAACGGCATCCGGTCAGCCGATCAAGCGGTGGGATGGAAGTAGGTGGGTGATCCATTATATTTCTGTTGATAACTTAAACGCACAGACTTTAAGTGCGATAGCGGCAGATCTTGGAACTGTAACTGCCGGACTTATTAAGGATAAGAATGGAACAATGCTTATCGATGTTACATCCGGAAAGATTATTAGCAAGAAAATCGTGCAAGGAGCAGTGGAAAATGTTGCGTCATTGAGTAATGCGTATTTGGCTTTCTCTGGTAAGGCTCCGACAACAGATCTAGCTACTATGAGCGTGAACTTGCAAAACATCATGTTTACAAATGAAAATACAAGAAAAGCAACGACAATCCAGTTTGAGGATGAAATGATATATGCAAGAAATTCTGTATCCCCACGTATAAGCATATATGCGTATCGCAATTACGATTCCGGCACCGTGAAAGGTCCATATACAAGTACAAACTCCGCAAATAACATCCGTGTGGAACTAAAAAGAAGAGGATGTATGGTAGCATGCAAGATCACAATGCTTGCACAGTTTCCAAATAGCGGTAGTTTCGGAGCGTTTGATGAGGTGCGAATCCCTATTGGGTATCGTCCAGTACTCGATATCAGAACACCTTACAATGAGGTGTCCGGTTCCTCGATTTTTGGAACTGGTCGATATCTAATCAGCAAAGACGGTGGAATTACAATCTATGTCAATAACCCAAATTGGACAGAACGGCATTTGTCGATCACGTGGATCACGGATGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
eed05b69a3abaeea511734dc18865b26abe51fabc3f8f7bd043e53a8ce2f8818
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8229
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Temperate bacteriophages infecting mucin-degrading bacterium Ruminococcus gnavus from the human gut Khokhlova,E.V., Shkoporov,A.N., Draper,L.A., Kingston,A.R., Forde,A., Ross,R.P. and Hill,C. 2023-03-30 — GenBank