Protein

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Genbank accession

XYM58789.1 [GenBank]

Protein name

subtilisin-like serine protease

RBP type

TSP

Evidence DepoScope

Probability 1,00

Protein sequence

MQEYIVTLIDFNDSDGFYEDMETEGGLITIPDRVVELVNRRPISRNTHYMLTEEEADQVRNDPRVLDVELKPADGMVTNVPTWTQTSTHFDKSTTDDSNDINWALLRCTRGSDISGWGSNGTVAQTATVSTTSSGKDVDVVIVDGHIDPAHPEFAVNDDGTGGTRVFQYNWYQHTPAVTGGVSGTYPYPTSSDWFCGNDNHGMHCAGTVAGNRQGWARDANIYNITPYSYSSVNSIHGTYTNYTVYNNASNNTFDYIREFHNNKSVNPSTGRKNPTVTNNSWGSSITINRSEFISVYYRGVTVTPATPGSPTDAELDSWGLVDYTSSTITFQFYSSSSVADVIDAINDGVIVVSAAGNDSTKIAAPGDVDYDNRIRFTYGSSTEYLNYYHRGSWNGVAGNGICVGSVDKTTGDYKATYSNSGTRVDIYAPGTAIQSSVHDGTVESGGSVVTLSTSNDPRDNTKKLNKYQGTSMASPQVCGVLACALEHNPNMTQQECVDYLQYHSTDGQITTSGSDTDYTNLRALHMGDNFYLYYNKERKEDGAVSPILSNKARPDSGAVFPRARNRVYA

Physico‐chemical properties

protein length:	570 AA
molecular weight:	62329,99920 Da
isoelectric point:	4,80559
aromaticity:	0,10000
hydropathy:	-0,56544

Domains

Domains [InterPro]

DC_1824
ATT
1–135

DC_1824 IPR015500 IPR015500 IPR015500

IPR036852
STR
44–508

IPR036852

IPR050131
Unmapped
51–508

IPR050131

IPR036852
STR
115–527

IPR036852

IPR036852
STR
115–530

IPR036852

PS51892
ENZ
116–526

PS51892

IPR000209
ENZ
135–505

IPR000209

IPR022398
Unmapped
201–211

IPR022398 IPR023828

XYM58789.1

1 570

Architecture

ATT

STR

ATT 1-135 | STR 136-530 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1824	ATT	DC_1824	1	135	Novel HMM	DC_1824	N-terminal	Low	Positional only	8 proteins / 8 hits
IPR036852	STR	IPR036852	44	508	Merged direct domain	Peptidase S8/S53 domain superfamily	Central	Low	Positional only	13 proteins / 13 hits
IPR050131	Unmapped	-	51	508	InterPro	Subtilisin-like serine protease	-	-	-	-
IPR036852	STR	IPR036852	115	527	Merged direct domain	Peptidase S8/S53 domain superfamily	Central	Low	Positional only	13 proteins / 13 hits
IPR036852	STR	IPR036852	115	530	Merged direct domain	Peptidase S8/S53 domain superfamily	Central	Low	Positional only	13 proteins / 13 hits
PS51892	ENZ	DC_0026	116	526	InterPro cluster	Serine proteases, subtilase domain profile.	Central	High	Text match	13 proteins / 20 hits
IPR015500	Unmapped	-	135	154	InterPro	Peptidase S8, subtilisin-related	-	-	-	-
IPR000209	ENZ	DC_0026	135	505	InterPro cluster	Peptidase S8/S53 domain	Central	High	Text match	13 proteins / 20 hits
IPR015500	Unmapped	-	197	210	InterPro	Peptidase S8, subtilisin-related	-	-	-	-
IPR022398	Unmapped	-	201	211	InterPro	Peptidase S8, subtilisin, His-active site	-	-	-	-
IPR015500	Unmapped	-	469	485	InterPro	Peptidase S8, subtilisin-related	-	-	-	-
IPR023828	Unmapped	-	470	480	InterPro	Peptidase S8, subtilisin, Ser-active site	-	-	-	-

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

XYM58789.1

1 570

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	107	107	0,2505
Central domain	108	306	200	0,5011
C-terminal	307	570	263	0,6535

Note: Constraints were applied during segmentation.
Fixed 89 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-107

Central
108-306

C-terminal
307-570

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Synechococcus phage Sf-FR1 [NCBI]	3413218	Viruses >
Host	No host information

Coding sequence (CDS)

Genbank protein accession

XYM58789.1 [NCBI]

Genbank nucleotide accession

PV340855 [NCBI]

CDS location

range 171827 -> 173539
strand +

CDS

ATGCAAGAATATATCGTAACTCTAATCGACTTTAATGATTCTGATGGTTTCTATGAAGACATGGAAACCGAAGGTGGTTTAATTACTATTCCAGATAGAGTTGTAGAACTAGTAAATAGAAGACCTATCAGTAGAAACACACATTACATGTTGACTGAGGAGGAAGCAGATCAAGTACGTAATGATCCTAGAGTTTTAGATGTTGAATTGAAACCAGCGGATGGTATGGTTACTAATGTTCCTACATGGACTCAGACATCAACTCATTTTGATAAGAGTACAACTGATGACAGTAATGATATTAACTGGGCACTTCTTAGATGTACAAGAGGTTCTGATATAAGCGGGTGGGGATCTAATGGAACCGTAGCACAGACTGCTACAGTCTCTACCACTTCATCTGGAAAGGATGTTGATGTTGTGATCGTGGATGGACATATTGATCCAGCACACCCTGAGTTCGCCGTAAATGACGATGGAACGGGTGGAACGAGAGTTTTCCAGTATAATTGGTATCAACATACTCCAGCGGTCACTGGAGGCGTTTCTGGGACGTATCCATACCCCACATCATCCGACTGGTTCTGTGGAAATGATAACCATGGGATGCACTGCGCTGGAACTGTTGCTGGAAACCGACAAGGGTGGGCGAGAGATGCAAATATCTATAACATAACTCCATACAGTTACTCTAGTGTCAACTCTATCCATGGGACGTATACAAACTATACTGTATACAATAACGCTAGTAATAATACTTTTGATTATATAAGAGAGTTTCATAATAATAAATCAGTTAACCCATCTACAGGTAGAAAAAATCCAACCGTTACTAATAATAGTTGGGGATCTAGCATTACTATTAATAGAAGTGAATTTATATCAGTTTATTATAGGGGGGTAACAGTTACTCCAGCAACTCCTGGTAGTCCCACTGATGCTGAGTTAGATTCTTGGGGACTGGTAGACTATACATCTTCTACAATAACATTTCAGTTTTATTCTTCGTCTTCGGTTGCTGATGTAATAGATGCTATTAATGATGGTGTTATTGTAGTATCTGCTGCTGGTAATGATAGCACAAAGATCGCAGCGCCTGGAGATGTAGACTATGATAATCGAATTAGATTTACATATGGATCTTCAACTGAGTATCTAAATTATTATCATAGAGGTAGTTGGAATGGTGTTGCTGGTAATGGAATCTGTGTTGGATCGGTTGATAAAACTACGGGAGATTACAAAGCAACATATAGTAACTCTGGAACTAGAGTTGATATCTATGCACCAGGAACTGCCATCCAATCTTCAGTTCATGATGGTACTGTAGAGAGTGGAGGTAGTGTAGTTACTCTTTCTACATCAAATGATCCAAGAGATAATACTAAGAAACTAAACAAGTATCAAGGAACTAGTATGGCATCACCACAGGTATGTGGTGTCCTTGCATGTGCGTTGGAACACAATCCAAACATGACTCAGCAAGAATGTGTAGATTATCTACAGTATCATTCTACTGATGGACAAATCACTACTTCTGGATCTGATACAGATTATACTAACCTTAGAGCTCTACACATGGGCGATAATTTCTATCTTTATTACAATAAAGAAAGAAAAGAGGATGGAGCAGTGAGCCCCATCCTCTCCAATAAAGCAAGACCAGACTCTGGAGCAGTGTTCCCCAGAGCAAGGAATAGAGTTTACGCCTGA

Genome Context

Tertiary structure

PDB ID

942f83cdc86ec438775c37130f42929e70b0d4c47798697bade5c03e8e99fa5e

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,8464

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence