Protein

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Genbank accession
XWX23502.1 [GenBank]
Protein name
non-contractile tail tubular protein
RBP type
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MDMGDALTYGLNDRIRMDRQAELVFKYFKAEDEWVSEPLPWTPTNPELLDCILIEGWDSYIGGSFLFKYNPSDNTLSTTFDMYDDSHVKAKVIVGQIYPQEFEPTPVVIRDNQDRVSYIDVPVVGLVHLNLDMYPDFSVEVKNVKSGKVRRVLASNRIGGALNNTVGYVEPREGVFRFPLRAKSTDVVYRIIVESPTHSSFVILSGKGATIQPKGGSNGYRFCRYGWYVFYW
Physico‐chemical
properties
protein length:232 AA
molecular weight: 26491,76690 Da
isoelectric point:5,45838
aromaticity:0,13362
hydropathy:-0,25431

Domains

Domains [InterPro]
DC_1770
STR
1–219
DC_1770
IPR058003
TTP
77–204
IPR058003
XWX23502.1
1 232
Architecture
STR
STR 1-219 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XWX23502.1
1 232
Domain Start End Length (AA) Confidence
N-terminal 1 26 26 0,9224
Central domain 27 221 196 0,0884
C-terminal 222 232 10 0,3431
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-26
Central
27-221
C-terminal
222-232

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage vB_Ka_Sem4
[NCBI] 		3440215 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Klebsiella aerogenes
[NCBI] 		548 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XWX23502.1 [NCBI]
Genbank nucleotide accession
PV775411 [NCBI]
CDS location
range 16816 -> 17514
strand -
CDS
ATGGACATGGGTGATGCACTAACCTACGGTTTGAATGACCGCATCAGAATGGATAGGCAAGCAGAGTTAGTCTTCAAGTATTTTAAAGCAGAAGATGAATGGGTGTCTGAACCGCTTCCTTGGACTCCTACTAACCCAGAACTTTTAGATTGCATCTTAATCGAGGGTTGGGATTCATATATTGGTGGCTCTTTCTTATTCAAGTACAACCCTAGTGACAATACTTTGTCTACAACCTTTGATATGTATGATGACAGTCATGTAAAAGCGAAGGTTATTGTTGGTCAGATTTACCCTCAAGAGTTTGAACCTACACCTGTGGTTATCAGAGACAATCAAGACCGTGTATCCTATATTGATGTACCAGTTGTAGGATTGGTTCACCTTAATCTTGACATGTACCCCGATTTCTCCGTAGAAGTTAAGAATGTGAAGAGTGGTAAAGTACGTAGAGTATTAGCGTCAAACCGTATAGGTGGTGCTCTCAATAATACAGTAGGCTATGTTGAACCGAGAGAAGGTGTCTTCAGATTTCCACTGAGAGCTAAGAGCACGGATGTTGTTTATCGTATTATTGTAGAGTCACCCACACATTCCAGCTTCGTGATATTGAGTGGGAAGGGAGCTACAATCCAACCAAAAGGAGGGTCTAATGGCTATAGGTTCTGCCGTTATGGCTGGTATGTCTTCTATTGGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
ae0cd2ce30662c23abd011e633f601d38807449e95f4668b3d65efb7fc6216e1
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,5293
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Unveiling novel lytic bacteriophages as natural biocontrol agents against multidrug-resistant Escherichia coli: Isolation, characterization, and in vitro application Tasdurmazli,S., Erdogdu,B., Saghrouchni,H., Var,I., Melo,L.D.R. and Ozbek,T. 2024-01-08 — GenBank