Protein

View in Explore
Genbank accession
YP_009204275.1 [GenBank]
Protein name
BppU family baseplate upper protein
RBP type
TF
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,91
Protein sequence
MDFTRRENYKLMSNLEKSVAINLENTAHYENISNLDITFRTGESDSSVLLFNITKNNQPLLLSEENIKARIAIRGKGVMVVAPLEILDPFKGALKFQLPNDVIKRDGSYQAQVSVAELGNSDVVVVERTITFNVEKSLFSMIPSETKLHYIVEFQELEKTIMDRAKAMDEAIKNGEDYASLIEKAKEKGLSDIQIAKSSSIDELKQLANSRITDLENKAQTYSRAFDEQKRYMDEKHEAFKQSVNSGGLVTSGSTSNWQKSKITKDDGKITQITGFDFNNPEQRVGDTTQFIYVSQAINYPRGVSTNGTVEYLVVTSDYKRMTYRPNGTNKVFVKRKEAGSWSDWSELAINDYNMPFETVQNAQSKANTAESNAKLYTDDKFNKRYSVIFDGTANGVGSTLNLNESLDQFILLIFYGTFPGGDFTEFGNPFGGGKISLNPSNLPDGDGNGGGVYEFGLTKSSRTSLTISNDVYFDLGSQRGSGANANRGTINKIIGVRR
Physico‐chemical
properties
protein length:499 AA
molecular weight: 55520,37780 Da
isoelectric point:5,61458
aromaticity:0,09218
hydropathy:-0,52184

Domains

Domains [InterPro]
G3DSA:2.60.40.3350
ATT
17–141
G3DSA:2.60.40.3350 DC_0143 DC_0151
IPR018913
ATT
17–163
IPR018913 Coil cd19958 Coil
YP_009204275.1
1 499
Architecture
ATT
STR
RBD
ATT 17-163 | STR 164-349 | RBD 350-499
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage vB_SauS_phi2
[NCBI] 		1674930 Uroviricota > Caudoviricetes > Triavirus >
Host Staphylococcus aureus
[NCBI] 		1280 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009204275.1 [NCBI]
Genbank nucleotide accession
NC_028862 [NCBI]
CDS location
range 19337 -> 20836
strand +
CDS
ATGGACTTTACACGAAGGGAGAATTATAAGTTAATGAGTAATTTAGAGAAATCTGTAGCTATAAATTTAGAAAACACAGCGCATTATGAAAATATTTCAAATCTAGATATAACTTTTAGAACAGGAGAGAGTGACTCTTCTGTTCTTCTTTTTAATATCACTAAAAATAATCAACCGTTATTATTGAGTGAAGAAAATATCAAAGCACGAATAGCGATTCGAGGTAAAGGAGTCATGGTAGTTGCTCCACTAGAAATATTAGATCCATTTAAAGGCGCATTAAAATTTCAATTACCTAACGATGTAATTAAACGAGATGGAAGTTATCAAGCTCAAGTTTCGGTTGCAGAGTTAGGCAATTCAGACGTGGTAGTTGTCGAGAGAACTATCACATTTAACGTTGAAAAAAGCTTGTTTAGCATGATTCCATCTGAAACAAAATTACACTATATTGTTGAATTTCAGGAATTAGAAAAAACTATTATGGATCGTGCGAAAGCAATGGACGAGGCTATAAAAAATGGTGAAGATTATGCGAGCCTGATTGAAAAAGCTAAAGAAAAAGGTTTGTCAGATATTCAAATAGCAAAATCTTCAAGTATAGATGAATTAAAGCAACTTGCAAATAGCCGTATAACCGATTTGGAAAATAAAGCGCAAACTTATTCAAGAGCATTCGATGAGCAAAAGCGGTATATGGATGAGAAACATGAAGCTTTTAAGCAATCTGTGAATAGTGGTGGTTTAGTCACAAGTGGTTCAACTTCAAATTGGCAAAAATCTAAGATTACTAAAGATGACGGTAAAATAACACAGATTACTGGATTTGATTTTAACAATCCAGAACAAAGAGTAGGAGATACAACGCAATTTATTTATGTATCACAAGCTATAAACTACCCAAGAGGTGTAAGCACTAATGGTACTGTCGAGTATTTAGTAGTAACTTCCGACTACAAACGTATGACATATCGTCCAAATGGTACAAATAAAGTATTTGTTAAAAGAAAAGAAGCGGGTTCTTGGTCTGATTGGTCAGAGTTAGCCATTAATGATTACAATATGCCTTTTGAAACTGTTCAAAACGCGCAATCAAAAGCTAATACGGCTGAAAGCAACGCCAAACTATACACGGATGACAAGTTTAATAAAAGATATTCAGTTATTTTTGATGGGACGGCAAATGGCGTTGGCTCAACATTAAATCTTAATGAAAGTTTAGATCAATTTATTTTGTTAATTTTTTATGGAACTTTTCCAGGGGGAGACTTTACTGAGTTTGGCAACCCCTTTGGTGGCGGTAAAATTTCATTGAATCCCTCAAATCTTCCAGATGGTGATGGAAATGGCGGAGGTGTTTATGAGTTTGGATTAACTAAATCTAGTCGTACATCTTTAACTATATCAAACGATGTCTATTTCGACTTAGGAAGTCAAAGAGGCTCTGGTGCGAACGCAAATAGAGGAACAATTAACAAAATTATAGGAGTGAGAAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
84c41180dac12d207d0b36b25ae4afe2aa9791bba0633fc1805ac01ec3267388
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8122
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Efficacy of two Staphylococcus aureus phage cocktails in cheese production El Haddad,L., Roy,J.-P., Khalil,G.E., St-Gelais,D., Champagne,C.P., Labrie,S. and Moineau,S. 2016-01 — GenBank