Protein

View in Explore
Genbank accession
YP_010658840.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MESQFRQPKQVINVEVNKQSIARNFGFGDNEVCYAKTGQPLTGYKAIYDRLSQRAYVLPPGLTGTVTSLSTAGVLTHSGGSVDLGAYAVTLGNYFDLRETFTSGATLQRKNETIGLGAKRYRWGGVLPKTVAGGSTIAGTGGVSETAWIETNAEFALGKVGASLSAWNDVLHLRDFLNAGFATTEAAVQSAFDAALLTTSKIVDATGVDVTFTNTLNFELGEIKVIGGVFRGDRDYKITGTQLDGVQFYNCRLRYWGGDVYIHNCHFDGPPRKGQVATISFQGNETEGTFEIDGCTFRGMYYGILAQGTGEKVNSFIARNLSFYDLMGDAIELNVVQKHYDNGCVIENIAIFNINADLAGVNTPTFQSNWGIGIGIAGQGPYGYEIDDSQYCKNFTIRNVYAEGVRQVVHVEVGRDFTVENIHADPDNTVSTGSGLATGTVVCYGSKDFVIDGIYGEPKVPSGTNPNIVRMIMLQWGTNPVLDPEGNPTGQGEKSNACFNYAVRNVFTKTGTVWAGVSAGPNTDNNASFENIRCNTFRVFGIATHLNLNNIDCRYFDCVGHPESGDGAFPNNFVRSDKTLLTMVNVNATDEYGQGGQFFSRCRYSKITRSGGNVYAEPWVNFTGQLGPLMVPVGQVYYQATGPHGTDGSYFPSGKEFNTSDVVLVTKNGVTTTYIVTSSGMYTPNNDNFAIRAAAAGTKTIVQQKVPDGTSTGSPWLYITQFEPGARITIPGAGVGGADLQTRVAKPPYQTPPSDPGALITMDITDAIVTAVPAGTRIRATVPLTSRPTLPTS
Physico‐chemical
properties
protein length:793 AA
molecular weight: 85181,22460 Da
isoelectric point:5,52761
aromaticity:0,10214
hydropathy:-0,19395

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–91
G3DSA:3.30.2020.50 G3DSA:2.10.10.80 IPR011050 DC_0045
G3DSA:3.30.2020.50
ATT
1–100
G3DSA:3.30.2020.50 G3DSA:2.10.10.80 DC_0354
IPR040775
RBD
99–150
IPR040775 IPR023882
YP_010658840.1
1 793
Architecture
ATT
STR
RBD
RBD
ATT 1-212 | STR 213-425 | RBD 426-455 | RBD 474-791 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010658840.1
1 793
Domain Start End Length (AA) Confidence
N-terminal 1 184 184 0,9940
Central domain 185 669 486 0,9952
C-terminal 670 793 123 0,4659
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-184
Central
185-669
C-terminal
670-793

Taxonomy

  Name Taxonomy ID Lineage
Phage Kosakonia phage Kc283
[NCBI] 		2863195 Uroviricota > Caudoviricetes > Schitoviridae > Cbunavirus Kc283 >
Host Kosakonia cowanii
[NCBI] 		208223 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010658840.1 [NCBI]
Genbank nucleotide accession
NC_070861.1 [NCBI]
CDS location
range 31262 -> 33643
strand -
CDS
ATGGAATCTCAATTCCGTCAGCCTAAACAGGTCATCAATGTCGAAGTGAACAAGCAGAGTATCGCTCGTAACTTCGGCTTTGGTGACAATGAAGTGTGCTATGCCAAAACAGGGCAGCCACTGACAGGCTATAAGGCTATCTACGACCGCTTAAGCCAGCGAGCATATGTATTACCTCCTGGTTTGACCGGTACGGTTACGTCGCTTTCTACTGCGGGTGTTCTAACTCACTCCGGTGGATCGGTAGATCTGGGTGCTTATGCGGTTACCCTGGGTAACTACTTTGACCTCCGGGAAACCTTTACCTCTGGTGCCACGCTACAGCGTAAGAACGAAACTATTGGCCTGGGTGCCAAGCGTTATCGTTGGGGTGGTGTATTACCTAAGACCGTTGCTGGCGGTTCCACCATTGCTGGTACAGGCGGTGTAAGTGAAACTGCTTGGATCGAAACCAATGCTGAATTTGCTCTGGGTAAAGTTGGTGCTTCACTTTCCGCATGGAATGACGTGCTCCACCTGCGTGACTTCCTCAACGCTGGTTTTGCTACTACTGAGGCGGCTGTTCAGTCTGCTTTTGATGCAGCTTTACTGACGACCAGTAAAATCGTTGATGCCACGGGTGTAGACGTGACTTTCACTAATACCCTTAACTTTGAACTCGGGGAGATCAAAGTCATTGGTGGTGTCTTCCGTGGTGACCGTGATTATAAGATCACCGGCACCCAGCTTGATGGTGTGCAGTTCTACAACTGCCGTCTGCGTTACTGGGGTGGCGACGTTTATATCCATAACTGTCACTTCGATGGGCCACCTCGTAAGGGTCAGGTTGCCACGATCTCTTTCCAAGGGAACGAGACTGAGGGCACCTTCGAAATCGACGGCTGTACGTTCCGTGGGATGTACTACGGCATTCTGGCTCAAGGTACTGGCGAGAAGGTTAACTCCTTCATTGCACGTAACCTGTCGTTCTATGATCTGATGGGCGATGCTATTGAGCTAAACGTTGTGCAGAAACACTACGACAATGGTTGTGTGATCGAGAACATTGCTATCTTCAATATCAATGCTGACCTGGCTGGCGTTAACACTCCAACCTTCCAGTCCAACTGGGGCATCGGTATCGGTATTGCAGGGCAGGGGCCATATGGCTATGAGATCGATGACAGCCAATACTGTAAAAACTTCACCATCCGTAACGTCTATGCAGAAGGGGTACGTCAGGTAGTTCACGTCGAAGTAGGCCGTGACTTCACTGTCGAGAACATCCATGCTGACCCGGATAACACTGTGTCTACAGGCTCTGGTTTAGCAACCGGTACGGTTGTCTGCTACGGATCCAAAGACTTTGTGATTGACGGTATTTACGGTGAGCCTAAAGTTCCATCTGGCACCAACCCTAACATTGTTCGTATGATCATGCTCCAGTGGGGTACTAACCCTGTTCTGGATCCAGAAGGTAACCCTACTGGTCAGGGTGAGAAGTCTAACGCCTGCTTTAACTATGCAGTGCGTAATGTCTTCACCAAAACTGGTACGGTGTGGGCAGGTGTATCTGCCGGGCCGAATACGGATAACAACGCATCGTTTGAAAACATCCGTTGTAACACCTTCCGTGTGTTCGGTATCGCTACTCACCTGAATCTGAACAACATTGACTGTCGTTATTTTGACTGTGTTGGTCATCCTGAATCTGGTGATGGTGCATTCCCAAATAACTTCGTGCGTAGCGATAAAACGCTGCTGACGATGGTTAACGTAAATGCTACCGATGAGTATGGTCAGGGCGGTCAGTTCTTTAGTCGCTGTCGTTACTCTAAGATCACCCGCTCCGGGGGTAACGTCTATGCTGAGCCGTGGGTGAACTTCACCGGGCAGCTTGGCCCACTAATGGTTCCAGTTGGTCAGGTTTATTACCAGGCTACTGGCCCGCATGGTACGGACGGTTCCTACTTCCCTTCCGGGAAGGAGTTCAATACCTCCGACGTGGTACTGGTGACAAAGAACGGTGTGACTACTACTTACATCGTAACGTCCTCCGGCATGTACACGCCGAACAATGATAACTTTGCGATCCGTGCTGCGGCAGCGGGTACGAAGACCATTGTTCAACAGAAGGTGCCTGACGGTACGTCCACTGGTTCTCCGTGGTTGTATATCACCCAGTTTGAACCAGGTGCTCGTATCACGATTCCTGGTGCGGGTGTGGGGGGTGCAGACCTTCAAACCAGAGTGGCTAAGCCTCCGTACCAGACTCCACCGTCTGATCCAGGTGCTCTTATTACGATGGATATCACTGATGCCATTGTAACGGCTGTACCAGCAGGAACGAGAATACGGGCTACTGTGCCACTAACTTCTCGACCTACTCTGCCAACATCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fcf7266d3452c109e8d30f6407103c2b31d58670681a291757e5d8fc0e92628f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6713
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel Viruses That Lyse Plant and Human Strains of Kosakonia cowanii Petrzik,K., Brazdova,S. and Krawczyk,K. 2021 — GenBank