Protein

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Genbank accession
WGH49688.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MSIINQNNVTLYSNNEPMNATVFNRPLQQIINEVNAYVPPEGGSTYSAGDGLSLSGTLFSVNGTVLRTTGNFTVSGVFTFSQIVTGAGFNSTSDIRLKNEITEIDTSLIDTSSIKLVSWIWGEHDVVPEQLRSTYDSGVIADEVLKVFPSCVTVNQHGYKTVDYGKLAVHLILSKKE
Physico‐chemical
properties
protein length:177 AA
molecular weight: 19267,38540 Da
isoelectric point:4,97696
aromaticity:0,08475
hydropathy:-0,04576

Domains

Domains [InterPro]
DC_1985
RBD
1–177
DC_1985
IPR030392
CHP
93–152
IPR030392
IPR030392
CHP
93–177
IPR030392
WGH49688.1
1 177
Architecture
RBD
RBD 1-177
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Alishewanella phage vB_AspM_Slicko01
[NCBI] 		3038238 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Alishewanella sp. SMS8
[NCBI] 		2994676 Pseudomonadota > Gammaproteobacteria > Alteromonadales > Alteromonadaceae > Alishewanella >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WGH49688.1 [NCBI]
Genbank nucleotide accession
OQ508956.1 [NCBI]
CDS location
range 111312 -> 111845
strand -
CDS
ATGTCAATAATCAATCAAAATAATGTAACGTTGTATTCAAACAACGAACCAATGAATGCAACCGTATTCAACAGACCACTTCAACAGATCATCAATGAGGTGAATGCCTATGTTCCACCAGAAGGTGGTAGTACTTATTCTGCTGGGGATGGTTTATCTTTATCTGGAACCTTATTCTCGGTTAATGGTACGGTACTTCGCACCACTGGTAACTTTACGGTATCTGGAGTTTTTACGTTCAGTCAGATCGTCACTGGTGCTGGATTTAATTCAACATCAGATATCAGACTTAAGAATGAAATAACAGAAATAGATACAAGTCTAATCGATACTTCCTCTATCAAACTTGTTAGTTGGATATGGGGAGAACATGATGTTGTTCCAGAACAGCTACGCAGCACCTACGACAGTGGCGTGATAGCAGATGAAGTGCTTAAGGTGTTTCCTAGTTGTGTAACAGTAAACCAACACGGTTATAAGACTGTGGATTATGGTAAGTTGGCCGTTCATCTAATCTTATCAAAGAAGGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a64f20d5beb5a5455d80a96c29facad3d31bd0fe657f0ab2234ec4fb338d8744
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7643
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Ecogenomics reveals distinctive viral-bacterial communities in the surface microlayer of a natural surface slick Rahlff,J., Wietz,M., Giebel,H.-A., Bayfield,O., Nilsson,E., Bergstrom,K., Kieft,K., Anantharaman,K., Ribas-Ribas,M., Schweitzer,H.D., Wurl,O., Hoetzinger,M., Antson,A. and Holmfeldt,K. 2023 — GenBank