Protein

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Genbank accession
XWX35901.1 [GenBank]
Protein name
pre-neck appendage protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MRLFLDFPVELGQEFRYKTVENFKRIVNAHGRLVDDLEYHRKEEKHAHDAKQIDYTTNYSRSVSDALDKQNNRINNLVVGANGDAMAEVKDSRVALDGTISELLSQRLDYDFGKLNKKIDDNFKYLNDKIERIVNVNDYGADPTGQKDSTLAFQKAFGEGHRHVHMTEGTYIISGVKMPNYTILSGEGKGITYLRIADDAPAETIGITNLNMDGTAEYIGVDNFTIDGNRTRQGNTLSPAGGSRSSNIRFAGVKHGFAYSVESFSSLLHGIDVTYASDDYFYQGDGIRVKEALESKYIHIQECETYDFGDDGITTHHSRYLILQNNYSHDPVKDSGNHNGIEVDDGSQHVFVMGNKTEKCFGGLEIKAHESTSAASDVVVSDHLDIKSIRSYNIRHIGHHRAGDVQSKTAYNIMLNNCTSLYPQYNGSYENTTPRAMVICAYRNVVVNNFTAIGDGNFMANMPVIAVQFRAENVMLNNINVSGFKNSLADVKVFGGANRPKKVSLSNINIVNSSNNRGIAGGGKIYDLRIINANLQGNGTGNGVELYNNTAEIVGVSAENYKRPAMIAGKEYFYMPTSLKGGFSGGSTGGAAIAERSAVIASTGGSFAHSNRSFVIGSGAGSIANGSRSGVISSLSSVIEPGGHTRMIINSKNMKNSENYHIKAGYGADGPPSESNTKLDISTFTGTIKTAGQVQSGQNFGDYAEYFESQSGMAIPTGNIVTLDGRFIRKAQVNDIPIGVISETAGVILGDQMFHHKDKYLKNEFGGVITESVKKEWQDDAGNWYSDTVEMPVKNPDFDERDEEEYLSRAERPEWNVVGLIGQVYIRIDGTVKENDYIKPVNGVGTKDNINGYYRVEQITTPYDNDKGYGVAIAFIHPITPSIINKGSVK
Physico‐chemical
properties
protein length:890 AA
molecular weight: 97576,33740 Da
isoelectric point:5,87968
aromaticity:0,08876
hydropathy:-0,46371

Domains

Domains [InterPro]
DC_0125
ATT
1–209
DC_0125 DC_0616 IPR021865
IPR012334
STR
117–577
IPR012334 G3DSA:2.160.10.20 G3DSA:2.40.300.10
IPR011050
STR
131–483
IPR011050 G3DSA:4.10.80.40
IPR024535
ENZ
133–364
IPR024535
XWX35901.1
1 890
Architecture
ATT
STR
RBD
ATT 1-209 | STR 210-646 | RBD 647-876 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XWX35901.1
1 890
Domain Start End Length (AA) Confidence
N-terminal 1 148 148 0,9934
Central domain 149 656 509 0,9865
C-terminal 657 890 233 0,9091
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-148
Central
149-656
C-terminal
657-890

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage PG-2021_88
[NCBI] 		2815640 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus epidermidis
[NCBI] 		1282 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XWX35901.1 [NCBI]
Genbank nucleotide accession
MZ417348 [NCBI]
CDS location
range 1666 -> 4338
strand +
CDS
TTGAGATTATTTTTAGATTTCCCTGTTGAATTAGGGCAAGAATTTAGATATAAAACAGTAGAAAATTTTAAAAGAATTGTTAATGCTCATGGGCGCTTAGTTGATGATTTAGAATACCATAGAAAAGAAGAGAAACACGCACATGATGCTAAACAAATTGATTACACAACAAATTATTCAAGAAGTGTTAGTGATGCATTAGATAAACAGAACAATAGAATCAATAATCTAGTAGTCGGTGCAAATGGAGATGCTATGGCAGAGGTTAAAGATAGCCGAGTTGCATTAGACGGAACAATAAGCGAATTACTTTCACAAAGACTAGATTATGATTTTGGTAAATTGAATAAAAAAATTGATGATAATTTTAAGTATCTTAACGACAAAATTGAACGTATTGTTAATGTTAACGATTATGGTGCTGACCCTACAGGTCAAAAAGATTCAACATTAGCATTCCAAAAAGCATTTGGAGAAGGTCATAGACATGTTCATATGACAGAAGGTACTTATATTATATCTGGTGTTAAAATGCCTAACTATACGATTTTAAGTGGGGAAGGTAAAGGAATAACATATTTAAGAATTGCAGATGATGCGCCAGCTGAAACAATTGGTATAACTAACTTAAATATGGATGGAACAGCTGAATATATTGGTGTTGATAATTTCACAATTGACGGAAATAGAACAAGACAAGGGAATACGTTATCTCCAGCTGGTGGTTCACGTTCAAGCAACATTAGATTTGCTGGTGTTAAGCATGGCTTTGCATATTCTGTAGAATCATTTAGTAGTTTATTACATGGTATTGATGTAACGTACGCTAGTGATGATTATTTTTATCAAGGAGACGGAATCAGAGTAAAAGAAGCATTAGAAAGTAAATATATTCATATACAAGAATGTGAAACTTATGATTTCGGAGACGATGGTATTACTACTCATCATAGTAGATACTTAATTCTACAAAACAACTATTCACATGACCCAGTAAAAGATAGTGGGAACCATAACGGTATTGAAGTAGACGATGGTTCACAACATGTGTTTGTTATGGGGAATAAAACAGAAAAATGTTTTGGCGGTTTAGAGATTAAAGCGCATGAATCTACAAGCGCAGCAAGTGATGTTGTTGTAAGTGACCATCTTGATATTAAAAGTATTCGTTCTTATAATATTCGTCATATAGGACATCATAGAGCCGGAGATGTACAATCTAAAACAGCTTATAATATTATGTTGAATAACTGTACTTCATTATATCCTCAATACAATGGTTCATATGAGAACACAACACCAAGAGCAATGGTTATTTGTGCTTACAGAAATGTAGTTGTTAATAACTTTACAGCTATTGGCGATGGCAACTTTATGGCAAATATGCCAGTTATTGCTGTTCAATTCAGAGCAGAAAACGTTATGCTTAACAATATTAATGTAAGTGGTTTCAAAAATTCATTAGCTGATGTTAAAGTATTTGGTGGAGCAAATAGACCTAAAAAAGTATCATTATCTAATATCAATATTGTTAATTCATCTAACAATAGAGGTATTGCAGGTGGTGGAAAAATTTATGATTTAAGAATTATAAATGCTAACTTGCAAGGTAATGGTACAGGAAATGGTGTTGAATTATATAATAACACAGCTGAAATTGTTGGAGTAAGTGCTGAGAATTATAAAAGACCAGCGATGATTGCTGGTAAAGAATACTTTTATATGCCAACAAGTCTTAAAGGAGGGTTCAGTGGGGGGAGCACAGGTGGTGCAGCTATTGCTGAAAGAAGTGCTGTTATTGCCTCTACTGGTGGTTCCTTTGCTCATAGTAACCGTTCTTTTGTTATAGGCTCTGGTGCTGGTAGTATTGCTAATGGTTCACGTTCTGGTGTTATTAGTTCATTGTCATCTGTTATTGAGCCAGGCGGACATACTAGAATGATTATTAATAGTAAAAACATGAAAAACAGTGAAAACTATCACATTAAAGCTGGTTATGGAGCTGACGGTCCACCAAGTGAATCAAATACTAAACTTGATATTAGTACATTTACTGGTACAATCAAGACAGCAGGACAAGTTCAATCTGGACAAAACTTTGGGGACTATGCCGAGTATTTTGAATCACAAAGTGGTATGGCAATTCCTACTGGTAATATAGTTACACTTGATGGCAGATTTATAAGAAAAGCACAAGTCAATGATATTCCAATCGGTGTTATATCTGAGACAGCAGGAGTTATTTTAGGGGACCAAATGTTCCATCACAAAGATAAATATCTTAAAAATGAGTTTGGCGGAGTCATTACTGAAAGCGTCAAAAAAGAATGGCAAGATGATGCTGGTAATTGGTATTCAGATACAGTAGAAATGCCAGTTAAAAATCCAGATTTTGACGAACGAGACGAAGAAGAATATCTATCTCGTGCTGAACGACCAGAATGGAACGTTGTAGGTCTTATAGGTCAAGTATATATTAGAATAGATGGTACTGTCAAAGAAAATGATTATATTAAGCCAGTAAACGGTGTCGGAACTAAAGATAATATTAATGGTTATTATAGAGTTGAACAAATTACTACCCCATATGATAACGATAAAGGTTATGGTGTGGCAATTGCATTTATCCACCCTATTACACCAAGCATAATTAATAAAGGAAGTGTTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4df6b52daba7192aeb477214cb48c72dc87d637ef588efb17cc2b06bc6bec14d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8966
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Natural phage communities crosslink different species within the genus Staphylococcus Goller,P.C., Elsener,T., Lorge,D., Radulovic,N., Bernardi,V., Naumann,A., Amri,N., Khatchatourova,E., Hernandes Coutinho,F., Loessner,M.J. and Gomez-Sanz,E. 2024 — GenBank