Protein

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Genbank accession
YP_004306691.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MANVIKTVLTYPLDGSTYDFNISFEYLARKFIVVTLIGTDRRVLTLNTDYRFATRTTISLIKAWGPDDGYTTIELRRVTSATDRLVDFTDGSILRAYDLNIAQIQTMHVAEEARDLTADNLGVNNDGDLDARGRRIVNVKDPTLPQDAATKNYVDLVSGGEGSAGKALEELAKPNGAYKIGLGDSTVGDIIGRRTYIVGITGQSNAAGARAGGPNPANPNIKVWDGATNSWGSSDYTKPPFSRSNPHGNNGNNNIGLAYAHRLIDEHKADQVFVIFDAVGGKPIEEWVDNDKNSPRYKGFTDKVVAALATPEVALTGRTKLDCLIWAQGEGNALTDTMEDYLGKFKKLDEQFRSETWMTETTPMYVMGMSGLHTRYQVWQAQIAYCENSNRNCVYVNSTGLKTQYDETRGDDYTHWLGNSLWLHGYERIWEASHGKGMTHRTQMPPFYARGSGPWSGQADAIAMFSSLVSIGSATKKFPIDGPSAQGSITWGLNCKADGNYTMAGGHTVTTANTAKYSFAWGRNISIGENANYSAGFGKDNVLNGSYQFAVGRGHNLNDDKTQALGHFSKYTTPQDNPVILQVGAGTSDTTRKNGLTVRSDGAVEICTNTQHDPSQNTEIVFQYAGNTSVVLKMRGTDGVVRKAVIGLTAESAQAQE
Physico‐chemical
properties
protein length:657 AA
molecular weight: 71593,78320 Da
isoelectric point:6,04803
aromaticity:0,08980
hydropathy:-0,45814

Domains

Domains [InterPro]
IPR005604
ATT
1–131
IPR005604 IPR052940 DC_0394
DC_1510
STR
1–444
DC_1510 IPR011049
SSF52266
STR
200–437
SSF52266 IPR011049
IPR005181
ENZ
200–408
IPR005181
IPR036514
STR
200–440
IPR036514
YP_004306691.1
1 657
Architecture
ATT
STR
RBD
STR
RBD
ATT 1-131 | STR 132-444 | RBD 445-481 | STR 482-631 | RBD 632-649 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004306691.1
1 657
Domain Start End Length (AA) Confidence
N-terminal 1 267 267 0,7271
Central domain 268 473 207 0,7502
C-terminal 474 657 183 0,6860
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-267
Central
268-473
C-terminal
474-657

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage Vi06
[NCBI] 		866889 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Teseptimavirus
Host Salmonella enterica subsp. enterica serovar Typhi
[NCBI] 		90370 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004306691.1 [NCBI]
Genbank nucleotide accession
NC_015271.1 [NCBI]
CDS location
range 31494 -> 33467
strand +
CDS
ATGGCCAACGTAATTAAGACCGTTTTGACTTACCCACTAGACGGTTCCACCTACGACTTCAACATTTCATTTGAGTACCTAGCCCGTAAGTTCATAGTGGTGACTCTTATTGGGACTGATAGGCGTGTCCTTACGCTCAACACAGATTATCGTTTCGCTACACGCACCACCATCTCGCTGATCAAGGCTTGGGGTCCTGATGATGGTTACACCACTATTGAGTTACGTAGAGTAACCTCGGCGACGGACCGTCTGGTGGATTTTACTGATGGTTCAATTCTCCGTGCTTATGACCTCAACATTGCTCAGATTCAAACGATGCATGTAGCAGAAGAGGCACGGGACCTCACTGCGGATAATCTCGGCGTTAACAATGATGGGGACTTAGATGCACGCGGTCGTCGTATTGTTAACGTAAAAGACCCTACGCTACCACAGGACGCAGCAACGAAAAACTACGTGGACTTAGTGTCTGGCGGTGAAGGCTCAGCTGGTAAGGCCCTTGAAGAACTGGCTAAACCGAATGGTGCCTATAAGATTGGACTGGGTGATAGCACAGTAGGGGACATTATTGGTCGGCGCACCTACATAGTCGGTATCACTGGGCAATCTAATGCTGCTGGTGCTAGGGCTGGTGGCCCAAACCCGGCCAATCCGAACATCAAAGTGTGGGACGGAGCGACAAACTCTTGGGGCTCTAGCGATTACACCAAGCCTCCTTTCTCACGAAGTAATCCACATGGAAACAATGGTAACAATAATATCGGCCTAGCATACGCCCACCGGCTCATTGACGAGCATAAGGCAGACCAAGTGTTTGTCATCTTTGATGCAGTTGGTGGTAAGCCTATAGAGGAGTGGGTGGATAACGATAAGAACTCTCCTCGTTACAAGGGATTCACGGACAAGGTGGTCGCTGCACTAGCTACCCCTGAAGTTGCCTTGACGGGACGCACCAAGTTAGACTGCCTCATCTGGGCGCAGGGCGAAGGCAACGCCCTCACCGATACCATGGAGGATTACCTAGGTAAGTTCAAGAAGCTTGACGAACAGTTCCGCTCGGAGACCTGGATGACGGAGACTACTCCTATGTACGTTATGGGAATGTCCGGACTACACACTCGGTATCAGGTATGGCAAGCACAAATAGCGTACTGCGAGAACTCAAACAGGAACTGTGTGTATGTCAACTCTACGGGCCTTAAGACTCAGTATGATGAGACAAGAGGAGACGACTATACGCACTGGCTTGGAAACTCTCTATGGCTACACGGGTATGAGCGCATCTGGGAAGCGTCACATGGTAAAGGTATGACCCATCGTACTCAGATGCCTCCATTTTACGCAAGAGGAAGTGGTCCTTGGTCTGGGCAAGCGGACGCTATTGCAATGTTTAGCTCCTTAGTGAGTATTGGCTCCGCAACCAAAAAGTTCCCCATCGATGGTCCATCAGCCCAAGGTTCAATCACATGGGGTTTAAACTGCAAGGCAGACGGTAACTACACGATGGCGGGCGGCCACACTGTAACTACAGCAAATACAGCCAAATACTCGTTTGCATGGGGGCGGAACATCTCCATTGGTGAGAACGCTAACTATTCGGCAGGTTTTGGTAAAGATAACGTACTAAACGGTAGCTATCAATTCGCTGTTGGACGGGGCCACAACCTCAATGATGATAAAACCCAGGCTTTAGGCCACTTCTCTAAGTACACTACTCCGCAGGATAATCCTGTGATTCTCCAAGTTGGCGCAGGAACCTCAGATACTACACGCAAGAATGGGCTCACTGTTCGTAGTGATGGTGCGGTGGAGATTTGCACTAATACTCAGCATGACCCATCTCAAAATACTGAGATTGTGTTTCAGTATGCTGGTAATACGTCTGTAGTGTTAAAGATGCGTGGTACTGATGGTGTGGTCCGTAAGGCTGTCATAGGGTTAACGGCGGAGTCGGCACAAGCACAGGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0cc398f860cd91d256101d687034be521f131407a96dafdb4fabb9f053951622
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7683
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50